CAZyme Information: TRIVIDRAFT_77195-t45_1-p1

Basic Information

• Species: Trichoderma virens
• Lineage: Ascomycota; Sordariomycetes; ; Hypocreaceae; Trichoderma; Trichoderma virens
• CAZyme ID: TRIVIDRAFT_77195-t45_1-p1
• CAZy Family: GT2
• CAZyme Description: glycoside hydrolase family 55 protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
800	ABDF02000081|CGC1	86076.99	7.4388

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_TvirensGv29-8	12405	413071	0	12405

• Gene Location: location=ABDF02000081:10822-13627(-)

Full Sequence      

MVRATQFLAWLAGVASAVNAAALEIAPEALVDRALTASLDASLTFGQCHPVIRKQDFWME
TIKHTGISPYLNDSSYAVYRNVKDFGAKGDGKTDDTAAIQAAIDAGGRCLWGCGPGDPPA
KTLKPALIYFPSGTYKISQTLNSYIFTQLVGNPLDRPILKADKNFSGRYLLDTFPSPTTS
PFPTTINLYYQVRNFVFDTTNVDVTSSVACVNWPSAQAVTLSFNHMKMAENSLHQGVVFN
GTTGGGGGSATFMGDLEFTGGNIGIRLNNQQYAMRALTFNNVKTGILVDHIFTLSLQGIK
FNNVNVGVNFTAAPKNSVGSVILIDSEAISTKNVVLSQHTMNADGSLIIENLKISRVGQV
VVDTQGSSLLSGSTRSTTIKSFIQGTVYKDLTTGKYLESSGSLSRPQALVDSSGAYWTKS
RPQYEQYSSGCFSSVRDFGATGDGKTDATKAINAALKANANRRITYFPAGNYRVSGTIHV
PVGSRIVGEVWSTISAYGKTFEDEKNPQVVFKMGDTGSRGIIEVSDIAFDVADVLPGAIL
VENNASGFKPGDVGLWDAHFRAGGTIGSAVETKCRSYPQSPIDQCKAAFLFMHLKSNSQT
YMESVWGWSVNRDLDGLSGATNGTSQSVAVGRGLLVESKRGTWLVGTAFEHFVLYQYQFV
GAENVHTLMAQTETVYWQPAPVAPSPWTPDARYSDPDYSNCDGSSLQCFMGWSLRVVGGS
DMTFYGLGFWQFFNGLNGVSGPYAQDNIVSIEGQPKRLKIFNLGTHLVKNMVTVNGNATA
FSADNKGGWGGLIAAYLPFA

Enzyme Prediction     

EC	3.2.1.58:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH55	53	796	1.7e-216	0.9851351351351352

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
403800	Pectate_lyase_3	1.64e-57	79	309	1	213	Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
403800	Pectate_lyase_3	6.40e-12	432	489	1	61	Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
227721	Pgu1	4.10e-05	81	110	84	118	Polygalacturonase [Carbohydrate transport and metabolism].
177865	PLN02218	0.001	434	523	69	169	polygalacturonase ADPG
227721	Pgu1	0.001	434	494	84	145	Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UKZ72681.1|GH55	0.0	1	800	1	800
QYS94604.1|GH55	0.0	1	800	1	800
UKZ46087.1|GH55	0.0	1	753	1	753
UKZ70679.1|GH55	0.0	1	800	1	800
UKZ93579.1|GH55	0.0	1	800	1	800

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5M5Z_A	1.30e-140	57	800	6	757	Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila],5M60_A Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila]
3EQN_A	8.74e-138	35	796	7	755	Chain A, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQN_B Chain B, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQO_A Chain A, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQO_B Chain B, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|D4B0V1|E13B_ARTBC	6.35e-129	50	796	36	873	Probable glucan endo-1,3-beta-glucosidase ARB_02077 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_02077 PE=1 SV=1
sp|P49426|EXG1_COCCA	2.66e-128	57	785	48	773	Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum OX=5017 GN=EXG1 PE=1 SV=1
sp|P53626|E13B_TRIHA	1.95e-71	53	796	33	760	Glucan endo-1,3-beta-glucosidase BGN13.1 OS=Trichoderma harzianum OX=5544 GN=bgn13.1 PE=1 SV=1
sp|Q9ZFG9|ALGE7_AZOVI	1.04e-06	81	138	4	47	Alginate lyase 7 OS=Azotobacter vinelandii OX=354 GN=algE7 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000237	0.999707	CS pos: 20-21. Pr: 0.9723

TMHMM  Annotations     

There is no transmembrane helices in TRIVIDRAFT_77195-t45_1-p1.