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CAZyme Information: TRIVIDRAFT_39916-t45_1-p1

You are here: Home > Sequence: TRIVIDRAFT_39916-t45_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Trichoderma virens
Lineage Ascomycota; Sordariomycetes; ; Hypocreaceae; Trichoderma; Trichoderma virens
CAZyme ID TRIVIDRAFT_39916-t45_1-p1
CAZy Family GH18
CAZyme Description glycoside hydrolase family 27 protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
496 ABDF02000091|CGC5 54411.22 5.2962
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TvirensGv29-8 12405 413071 0 12405
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.22:15

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH27 123 399 3e-73 0.9694323144104804

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
269893 GH27 8.80e-126 28 317 1 271
glycosyl hydrolase family 27 (GH27). GH27 enzymes occur in eukaryotes, prokaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-N-acetylgalactosaminidase, and 3-alpha-isomalto-dextranase. All GH27 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH27 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.
177874 PLN02229 7.22e-112 13 408 48 411
alpha-galactosidase
166449 PLN02808 3.76e-109 20 415 24 375
alpha-galactosidase
178295 PLN02692 4.43e-104 22 377 50 369
alpha-galactosidase
374582 Melibiase_2 4.58e-79 27 317 1 284
Alpha galactosidase A.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 496 1 494
0.0 1 496 1 499
0.0 1 496 1 497
0.0 1 496 1 496
1.77e-282 94 496 1 403

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.59e-163 8 482 7 471
Chain A, Alpha-galactosidase 1 [Saccharomyces cerevisiae],3LRL_A Chain A, Alpha-galactosidase 1 [Saccharomyces cerevisiae]
4.20e-162 8 482 7 471
Chain A, Alpha-galactosidase 1 [Saccharomyces cerevisiae],3LRM_B Chain B, Alpha-galactosidase 1 [Saccharomyces cerevisiae],3LRM_C Chain C, Alpha-galactosidase 1 [Saccharomyces cerevisiae],3LRM_D Chain D, Alpha-galactosidase 1 [Saccharomyces cerevisiae]
6.16e-128 21 406 2 378
Crystal structure of alpha-galactosidase I from Mortierella vinacea [Umbelopsis vinacea]
1.95e-94 22 400 3 337
Chain A, alpha-galactosidase [Oryza sativa]
6.08e-87 20 417 1 354
Nicotiana benthamiana alpha-galactosidase [Nicotiana benthamiana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.61e-169 13 479 15 468
Alpha-galactosidase OS=Zygotorulaspora mrakii OX=42260 GN=MEL PE=3 SV=1
1.02e-167 22 479 24 468
Alpha-galactosidase OS=Saccharomyces mikatae OX=114525 GN=MEL PE=3 SV=1
5.85e-167 22 482 24 471
Alpha-galactosidase OS=Saccharomyces paradoxus OX=27291 GN=MEL PE=3 SV=1
1.10e-166 22 479 23 467
Alpha-galactosidase OS=Lachancea cidri OX=29831 GN=MEL PE=3 SV=1
1.30e-166 8 482 11 472
Alpha-galactosidase OS=Torulaspora delbrueckii OX=4950 GN=MEL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.722556 0.277462

TMHMM  Annotations      help

There is no transmembrane helices in TRIVIDRAFT_39916-t45_1-p1.