CAZyme Information: TRIVIDRAFT_32683-t45_1-p1

Basic Information

• Species: Trichoderma virens
• Lineage: Ascomycota; Sordariomycetes; ; Hypocreaceae; Trichoderma; Trichoderma virens
• CAZyme ID: TRIVIDRAFT_32683-t45_1-p1
• CAZy Family: GH16
• CAZyme Description: glycoside hydrolase family 55 protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
762		80687.65	6.7105

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_TvirensGv29-8	12405	413071	0	12405

• Gene Location: location=ABDF02000003:648664-651071(+)

Full Sequence      

MLKLTAVVALLLGAASASPTPSPPASDEGITKRATSFYYPNMDHVNAPRGYAPDLDGNFN
YQVYQTVNPGDGGALQRAITSDGSGSRHPQWFASQPRVVYIPPGTYTISQTLRFNTDTVL
MGDPTNPPIIKAAAGFSGDQTLVSGQDPTTNEKGELSFAVALKNVILDTTAIPGGNQFTA
LWWGVAQAAQLQNVKITMASSQNGNGHTGIRMGRGSTLGLADVRIERGQNGIWIDGHQQA
AFHNIYFYQNTVGMLISGGNTFSIFSSTFDTCGTGISNTGGAPWIALIDAKSINSGVTFT
TTGWPSFMIENLTKDNGTPVVVARGSTLVGASSHVNTYSYGNTVGRNPTYGDVTSSNTRP
SGLAPGGRYPYVAPPTYGDLPISSFLNVKDPAQNGGRTVKGDNTLDESGTLNAILELAAS
QNKVAYFPFGKYRVDSTLFIPKGSRIVGEAWATITGNGNFFKNENSPQPVVSVGRPGDVG
VAQIQDMRFTVSDALAGAIIVQFNMAGNNPGDVALWNSLVTVGGTRGASALTNACGNPGN
ECKGAFIGIHLAKGSSAYIQNVWNWVADHIAESFSGGSSIAGKGGVLVESNGNKGTWLYA
LGSEHWWLYQLNLHNANNVVVSLLQSETNYEQGSNTQQIPPAPWVANVDTWGDPNFSWCN
GGDKICRMGFGNYINGGSNIYTYASASWAFFSGPGYQGCSQFNCQQTMHWIAKTPSNLQA
YGICSKDSVNTLRLGDGTFINTQNGYTGSWSPGGGDVGRYTT

Enzyme Prediction     

EC	3.2.1.39:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH55	31	760	2e-227	0.9878378378378379

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
403800	Pectate_lyase_3	3.38e-37	71	276	17	212	Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
403800	Pectate_lyase_3	0.008	385	460	1	74	Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UKZ48908.1|GH55	0.0	1	762	1	762
AAL84695.1|GH55	0.0	1	762	1	762
UKZ75437.1|GH55	0.0	1	762	1	739
ADB07373.1|GH55	0.0	1	762	1	762
ABM55269.1|GH55	0.0	1	762	1	762

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5M5Z_A	7.89e-78	45	740	9	736	Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila],5M60_A Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila]
3EQN_A	1.50e-76	37	748	26	747	Chain A, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQN_B Chain B, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQO_A Chain A, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQO_B Chain B, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|P53626|E13B_TRIHA	0.0	1	762	1	762	Glucan endo-1,3-beta-glucosidase BGN13.1 OS=Trichoderma harzianum OX=5544 GN=bgn13.1 PE=1 SV=1
sp|P49426|EXG1_COCCA	1.47e-79	49	722	56	750	Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum OX=5017 GN=EXG1 PE=1 SV=1
sp|D4B0V1|E13B_ARTBC	5.10e-66	3	735	13	852	Probable glucan endo-1,3-beta-glucosidase ARB_02077 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_02077 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000208	0.999744	CS pos: 17-18. Pr: 0.9873

TMHMM  Annotations     

There is no transmembrane helices in TRIVIDRAFT_32683-t45_1-p1.