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CAZyme Information: TRIVIDRAFT_29344-t45_1-p1

You are here: Home > Sequence: TRIVIDRAFT_29344-t45_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Trichoderma virens
Lineage Ascomycota; Sordariomycetes; ; Hypocreaceae; Trichoderma; Trichoderma virens
CAZyme ID TRIVIDRAFT_29344-t45_1-p1
CAZy Family GH13
CAZyme Description glycoside hydrolase family 55 protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
900 96603.99 5.0080
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TvirensGv29-8 12405 413071 0 12405
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in TRIVIDRAFT_29344-t45_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH55 165 899 1.7e-242 0.9567567567567568

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
403800 Pectate_lyase_3 3.95e-84 194 424 1 212
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
403800 Pectate_lyase_3 1.69e-07 563 675 9 128
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
227721 Pgu1 6.16e-06 196 298 84 183
Polygalacturonase [Carbohydrate transport and metabolism].
177865 PLN02218 2.75e-04 196 305 69 179
polygalacturonase ADPG
215120 PLN02188 0.007 196 304 38 143
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 900 1 900
0.0 1 900 1 900
0.0 64 900 58 907
1.34e-267 75 897 454 1268
1.49e-267 74 897 418 1240

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.37e-182 170 899 4 730
Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila],5M60_A Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila]
6.19e-176 172 892 26 725
Chain A, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQN_B Chain B, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQO_A Chain A, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium],3EQO_B Chain B, Glucan 1,3-beta-glucosidase [Phanerodontia chrysosporium]
1.16e-08 196 272 76 150
Chain A, Putative pectin lyase [Geobacillus virus E2],7CHU_B Chain B, Putative pectin lyase [Geobacillus virus E2],7CHU_C Chain C, Putative pectin lyase [Geobacillus virus E2]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.70e-165 168 900 39 851
Probable glucan endo-1,3-beta-glucosidase ARB_02077 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_02077 PE=1 SV=1
2.90e-153 171 881 47 744
Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum OX=5017 GN=EXG1 PE=1 SV=1
2.23e-40 165 898 30 732
Glucan endo-1,3-beta-glucosidase BGN13.1 OS=Trichoderma harzianum OX=5544 GN=bgn13.1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000275 0.999717 CS pos: 25-26. Pr: 0.9799

TMHMM  Annotations      download full data without filtering help

Start End
9 26