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CAZyme Information: TRIREDRAFT_122780-t26_1-p1

You are here: Home > Sequence: TRIREDRAFT_122780-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Trichoderma reesei
Lineage Ascomycota; Sordariomycetes; ; Hypocreaceae; Trichoderma; Trichoderma reesei
CAZyme ID TRIREDRAFT_122780-t26_1-p1
CAZy Family CE15
CAZyme Description glycoside hydrolase family 28
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
457 GL985070|CGC1 50348.94 4.5755
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TreeseiQM6a 9138 431241 7 9131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in TRIREDRAFT_122780-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 113 438 1.5e-55 0.8461538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 3.57e-22 124 431 19 318
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 1.36e-17 107 395 117 379
Probable polygalacturonase
177865 PLN02218 3.02e-15 61 395 82 393
polygalacturonase ADPG
178580 PLN03003 1.62e-12 147 314 119 275
Probable polygalacturonase At3g15720
215540 PLN03010 7.85e-12 47 414 44 377
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.80e-310 8 451 7 450
1.54e-305 1 457 1 459
7.22e-299 1 456 1 457
4.24e-291 1 456 1 457
5.83e-214 37 436 39 438

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.70e-10 150 436 83 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]
8.02e-10 138 415 68 335
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.19e-105 48 451 31 428
Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2
2.11e-72 46 420 27 414
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
2.11e-72 46 420 27 414
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
1.29e-70 51 415 32 417
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
1.29e-70 51 415 32 417
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000445 0.999500 CS pos: 28-29. Pr: 0.6648

TMHMM  Annotations      help

There is no transmembrane helices in TRIREDRAFT_122780-t26_1-p1.