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CAZyme Information: TREMEDRAFT_68157-t26_1-p1

You are here: Home > Sequence: TREMEDRAFT_68157-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Tremella mesenterica
Lineage Basidiomycota; Tremellomycetes; ; Tremellaceae; Tremella; Tremella mesenterica
CAZyme ID TREMEDRAFT_68157-t26_1-p1
CAZy Family GT35
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
453 50553.57 5.0738
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TmesentericaDSM1558 8309 578456 1 8308
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in TREMEDRAFT_68157-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL38 70 360 3.2e-73 0.967741935483871

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
398861 Alginate_lyase 4.58e-51 69 366 1 274
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.61e-155 26 442 28 444
1.33e-154 26 440 28 442
1.33e-154 26 440 28 442
4.05e-153 21 438 21 438
1.32e-151 26 442 26 442

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.22e-27 59 357 37 316
Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution [Bacteroides ovatus ATCC 8483],3NNB_A Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution [Bacteroides ovatus ATCC 8483]

Swiss-Prot Hits      help

TREMEDRAFT_68157-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.408378 0.591594 CS pos: 19-20. Pr: 0.4399

TMHMM  Annotations      help

There is no transmembrane helices in TREMEDRAFT_68157-t26_1-p1.