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CAZyme Information: TREMEDRAFT_40356-t26_1-p1

You are here: Home > Sequence: TREMEDRAFT_40356-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Tremella mesenterica
Lineage Basidiomycota; Tremellomycetes; ; Tremellaceae; Tremella; Tremella mesenterica
CAZyme ID TREMEDRAFT_40356-t26_1-p1
CAZy Family GH20
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
612 JH711537|CGC2 68785.78 6.4681
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TmesentericaDSM1558 8309 578456 1 8308
Gene Location Start: 895582; End:898132  Strand: +

Full Sequence      Download help

MRSLDDSING  LWRCTVAPLP  DGRCTISQGA  EVRVIITPFS  GSGKLQYLER  IPAQIYHATQ60
TTGEVHYRGR  MSSPPRPFPE  LGLENEFPTA  GRQRPARPPK  PRAERIYEAH  IGISSGVAGQ120
LGTFDSFRQS  VLPRIIKAGY  TTVQLMGVAE  HPYYPSFGYQ  VTNFFAVSSR  FGSVTDLIAL180
IDDAHSKGIR  VVMDIVHAHA  STNEGEGLNR  FDGTENAGYF  KGHLHPEWTT  RLFDYEQMET240
LRFLLCNLRY  WITRVGFDGF  RFDAVTAMIY  RDHGLNRSFT  GRYDEYFGSH  IDDHAITYLM300
LANHLLDLLA  PGQLTTIAED  VSGYPSLCIP  VSEGGIGFTY  RLALGIPDCW  FDLLRRESDM360
DAQSLGFIAK  ILGSLMLRRA  NLGEPSIAFV  ESHDQCIVGG  STAAQWLFAG  DIYSCMSRFQ420
EATPRVEMAM  AWHKLMRMLT  HTLGGEGYMN  FMGNEFGHPE  ASWIDLPSDN  NHYSQDRAYR480
KWNLVDDTTL  RFEQLHGFDQ  ALNDREEQYH  WLSALPGDVL  LHEEAKRHLV  YVRADLLFIY540
NLDGEKSWTG  PVPAPKAGRW  ANALDTDEGW  YGGKGQTSRE  VLAIVTTRTG  AKATINNCFI600
PPRTGAIFRH  VS612

Enzyme Prediction      help

EC 2.4.1.18:50

CAZyme Signature Domains help

Created with Snap3061911221531832142442753063363673974284594895205505811293GH13
Family Start End Evalue family coverage
GH13 156 454 3.6e-110 0.9965870307167235

CDD Domains      download full data without filtering help

Created with Snap30619112215318321424427530633636739742845948952055058110575PLN0244794500AmyAc_bac_euk_BE25609PLN0296026609PLN032441581GlgB
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
215246 PLN02447 0.0 10 575 150 694
1,4-alpha-glucan-branching enzyme
200460 AmyAc_bac_euk_BE 0.0 94 500 8 406
Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.
215519 PLN02960 2.72e-132 25 609 333 890
alpha-amylase
178782 PLN03244 5.07e-105 26 609 339 865
alpha-amylase; Provisional
223373 GlgB 8.79e-76 1 581 64 598
1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism].

CAZyme Hits      help

Created with Snap30619112215318321424427530633636739742845948952055058110581CAB3248420.1|CBM48|GH13_810573AAH84621.1|GH13_810611BAN20987.1|CBM48|GH13_810576CDU25302.1|CBM48|GH13_810608AOW02445.1|GH13_8
Hit ID E-Value Query Start Query End Hit Start Hit End
CAB3248420.1|CBM48|GH13_8 1.63e-161 10 581 108 657
AAH84621.1|GH13_8 2.90e-158 10 573 105 644
BAN20987.1|CBM48|GH13_8 7.58e-157 10 611 110 691
CDU25302.1|CBM48|GH13_8 1.03e-156 10 576 119 664
AOW02445.1|GH13_8 1.51e-156 10 608 93 682

PDB Hits      download full data without filtering help

Created with Snap306191122153183214244275306336367397428459489520550581105735CLT_A105734BZY_A105813AMK_A105817ML5_A105813VU2_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5CLT_A 7.36e-152 10 573 88 627
Crystal structure of human glycogen branching enzyme (GBE1) in complex with acarbose [Homo sapiens],5CLT_B Crystal structure of human glycogen branching enzyme (GBE1) in complex with acarbose [Homo sapiens],5CLT_C Crystal structure of human glycogen branching enzyme (GBE1) in complex with acarbose [Homo sapiens],5CLW_A Crystal structure of human glycogen branching enzyme (GBE1) in complex with maltoheptaose [Homo sapiens],5CLW_B Crystal structure of human glycogen branching enzyme (GBE1) in complex with maltoheptaose [Homo sapiens],5CLW_C Crystal structure of human glycogen branching enzyme (GBE1) in complex with maltoheptaose [Homo sapiens]
4BZY_A 2.04e-151 10 573 120 659
Crystal structure of human glycogen branching enzyme (GBE1) [Homo sapiens],4BZY_B Crystal structure of human glycogen branching enzyme (GBE1) [Homo sapiens],4BZY_C Crystal structure of human glycogen branching enzyme (GBE1) [Homo sapiens]
3AMK_A 5.09e-149 10 581 101 654
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L [Oryza sativa Japonica Group]
7ML5_A 6.98e-149 10 581 100 653
Chain A, Isoform 2 of 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic [Oryza sativa Japonica Group]
3VU2_A 1.43e-148 10 581 101 654
Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L [Oryza sativa Japonica Group],3VU2_B Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L [Oryza sativa Japonica Group]

Swiss-Prot Hits      download full data without filtering help

Created with Snap30619112215318321424427530633636739742845948952055058110608sp|Q6CCT1|GLGB_YARLI10573sp|Q6EAS5|GLGB_HORSE10573sp|Q6T308|GLGB_FELCA10573sp|Q9D6Y9|GLGB_MOUSE10573sp|Q04446|GLGB_HUMAN
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|Q6CCT1|GLGB_YARLI 2.69e-157 10 608 93 682
1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=GLC3 PE=3 SV=1
sp|Q6EAS5|GLGB_HORSE 5.43e-153 10 573 117 656
1,4-alpha-glucan-branching enzyme OS=Equus caballus OX=9796 GN=GBE1 PE=1 SV=1
sp|Q6T308|GLGB_FELCA 7.66e-153 10 573 117 656
1,4-alpha-glucan-branching enzyme OS=Felis catus OX=9685 GN=GBE1 PE=2 SV=1
sp|Q9D6Y9|GLGB_MOUSE 3.73e-151 10 573 120 659
1,4-alpha-glucan-branching enzyme OS=Mus musculus OX=10090 GN=Gbe1 PE=1 SV=1
sp|Q04446|GLGB_HUMAN 4.18e-150 10 573 120 659
1,4-alpha-glucan-branching enzyme OS=Homo sapiens OX=9606 GN=GBE1 PE=1 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000074 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in TREMEDRAFT_40356-t26_1-p1.