logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: TPX47135.1

You are here: Home > Sequence: TPX47135.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Synchytrium endobioticum
Lineage Chytridiomycota; Chytridiomycetes; ; Synchytriaceae; Synchytrium; Synchytrium endobioticum
CAZyme ID TPX47135.1
CAZy Family GH79
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
615 67849.81 6.9379
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_SendobioticumMB42 8031 N/A 0 8031
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in TPX47135.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA1 70 546 1.2e-89 0.9804469273743017

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
274555 ascorbase 6.73e-65 67 557 15 529
L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
177843 PLN02191 3.84e-55 77 556 47 551
L-ascorbate oxidase
274556 laccase 7.75e-54 72 551 22 519
laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
215324 PLN02604 5.08e-53 67 556 38 551
oxidoreductase
225043 SufI 7.99e-51 77 553 57 450
Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) [Cell cycle control, cell division, chromosome partitioning, Inorganic ion transport and metabolism, Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.72e-65 55 557 44 541
7.49e-65 57 571 56 551
8.79e-63 49 570 24 526
2.78e-62 55 557 43 542
1.87e-61 54 569 26 508

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.70e-55 56 570 27 507
Crystal structure of laccases from Pycnoporus sanguineus, izoform II [Trametes coccinea],5NQ9_A Crystal structure of laccases from Pycnoporus sanguineus, izoform II, monoclinic [Trametes sanguinea],5NQ9_C Crystal structure of laccases from Pycnoporus sanguineus, izoform II, monoclinic [Trametes sanguinea]
7.10e-55 56 570 27 507
Crystal structure of laccases from Pycnoporus sanguineus, izoform I [Trametes sanguinea]
1.28e-54 67 570 17 488
Chain A, LACCASE 2 [Trametes versicolor]
2.68e-53 48 549 18 489
Crystal structure of laccase from Lentinus sp. at 1.8 A resolution [Lentinus],3X1B_B Crystal structure of laccase from Lentinus sp. at 1.8 A resolution [Lentinus]
6.88e-53 60 581 11 495
Chain A, LACCASE 1 [Coprinopsis cinerea]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.47e-55 58 570 30 509
Laccase-4 OS=Trametes villosa OX=47662 GN=LCC4 PE=3 SV=1
3.73e-54 67 570 37 508
Laccase-2 OS=Trametes versicolor OX=5325 GN=LCC2 PE=1 SV=1
1.89e-53 67 570 37 508
Laccase-2 OS=Trametes villosa OX=47662 GN=LCC2 PE=3 SV=1
2.57e-53 56 570 27 507
Laccase OS=Pycnoporus cinnabarinus OX=5643 GN=LCC3-1 PE=1 SV=1
2.67e-53 58 570 30 509
Laccase-4 OS=Trametes versicolor OX=5325 GN=LCC4 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000465 0.999512 CS pos: 18-19. Pr: 0.9314

TMHMM  Annotations      help

There is no transmembrane helices in TPX47135.1.