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CAZyme Information: TPX41877.1

You are here: Home > Sequence: TPX41877.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Synchytrium endobioticum
Lineage Chytridiomycota; Chytridiomycetes; ; Synchytriaceae; Synchytrium; Synchytrium endobioticum
CAZyme ID TPX41877.1
CAZy Family GH18
CAZyme Description pectinesterase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
332 36249.15 7.2375
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_SendobioticumMB42 8031 N/A 0 8031
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.1.1.11:2

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE8 28 302 7.2e-77 0.9166666666666666

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
215357 PLN02665 2.52e-54 29 297 70 328
pectinesterase family protein
395871 Pectinesterase 1.08e-51 28 297 1 266
Pectinesterase.
178051 PLN02432 9.66e-51 24 297 9 260
putative pectinesterase
178372 PLN02773 6.72e-48 29 297 7 270
pectinesterase
215179 PLN02314 8.45e-47 20 297 270 540
pectinesterase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.99e-64 36 332 34 332
3.17e-63 22 332 21 330
3.45e-63 35 332 38 333
6.68e-62 37 332 60 353
9.09e-62 35 332 33 328

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.94e-39 39 318 19 288
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015]
4.12e-39 39 318 19 288
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015]
4.70e-22 28 315 8 291
Pectin methylesterase from Carrot [Daucus carota]
1.00e-19 28 297 4 269
Chain A, Pectinesterase 1 [Solanum lycopersicum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.33e-58 17 332 15 330
Pectinesterase OS=Aspergillus niger OX=5061 GN=pme1 PE=1 SV=1
4.25e-53 11 331 9 330
Pectinesterase OS=Aspergillus aculeatus OX=5053 GN=pme1 PE=2 SV=1
2.89e-38 39 318 47 316
Probable pectinesterase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pmeA PE=3 SV=1
3.77e-38 39 331 44 324
Probable pectinesterase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pmeA PE=3 SV=1
1.03e-37 39 331 44 324
Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pmeA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.229232 0.770746 CS pos: 25-26. Pr: 0.6995

TMHMM  Annotations      download full data without filtering help

Start End
7 29