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CAZyme Information: TPX38650.1

You are here: Home > Sequence: TPX38650.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Synchytrium endobioticum
Lineage Chytridiomycota; Chytridiomycetes; ; Synchytriaceae; Synchytrium; Synchytrium endobioticum
CAZyme ID TPX38650.1
CAZy Family CE4
CAZyme Description Chitin-binding type-1 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A507CAP3]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
586 62983.01 7.9578
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_SendobioticumMB42 8031 N/A 0 8031
Gene Location Start: 6863; End:9413  Strand: +

Full Sequence      Download help

MNLAISILIT  TLLASLHTAI  AYRCIERYAL  TVTTDAQAFG  ATAQFDECMH  FPNGMALQFQ60
SGSLQDLKLP  IVISSATCDG  NELMQFADLS  HNAHKTAYGT  YDLLIPLNHS  VYVKKIQLRA120
QKVDATRLYL  DKIFIVQCTP  AFHLQKRASE  GSCGPEIGSC  PFGYCCSTYG  YCGTTRAYCG180
AGCQANHGNC  TVVTIQTSPT  VRSSASTANL  SPSTSVTFSR  SSSITRSISI  KPSPFASPTP240
SQITSNLPSS  SPATEASSII  SSRSPPPAVQ  NSATRYSTIT  APRSTSLTRR  PTGANPSPSK300
TIKTPTSWDN  SEAAFPTLGA  SCSSTCGSPQ  IQCIDSICQR  YWTQPLWTST  TLTDKIMLEG360
WNVTKYAYDA  GRSVTTDPAG  GSELVMRVPY  PAGSRNPAHE  PIGGTGFYAS  PLGDMTGMTH420
VVMQFDVYFP  AEYNFVKGGK  LPGGIGGHSG  CSGSATATDC  YSTRHMWRTN  GLGEVYLYIY480
QPGQLPGFCS  ENNTICIPTD  GISVGRGSFK  LATGVWNTIK  QIVTLNSFDS  KGNPVPDDKK540
AVIFRLTPDM  HPVGIDFETF  FGGSDDTWSS  PTLQYSYFRR  VSLSAY586

Enzyme Prediction      help

EC 4.2.2.26:2

CAZyme Signature Domains help

Created with Snap2958871171461752052342632933223513804104394684985275563209PL14
Family Start End Evalue family coverage
PL14 384 582 4.2e-41 0.9809523809523809

CDD Domains      download full data without filtering help

Created with Snap295887117146175205234263293322351380410439468498527556152185Chitin_bind_1152186ChtBD1152190ChtBD1_1153187ChtBD1153188ChtBD1_GH19_hevein
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395135 Chitin_bind_1 1.59e-12 152 185 1 36
Chitin recognition protein.
211311 ChtBD1 3.51e-11 152 186 1 37
Hevein or type 1 chitin binding domain. Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements.
211316 ChtBD1_1 3.87e-10 152 190 1 43
Hevein or type 1 chitin binding domain; filamentous ascomycete subfamily. Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements.
214593 ChtBD1 1.79e-09 153 187 2 38
Chitin binding domain.
211312 ChtBD1_GH19_hevein 4.14e-08 153 188 3 40
Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains. This subfamily includes Hevein, a major IgE-binding allergen in natural rubber latex. ChtBD1 is a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements.

CAZyme Hits      help

Created with Snap295887117146175205234263293322351380410439468498527556360586CDS02791.1|PL14_3369583CDS05384.1|PL14_3363584BAE81787.1|PL14|4.2.2.26381583UOH83040.1|PL14_3346584AFQ98373.1|PL14
Hit ID E-Value Query Start Query End Hit Start Hit End
CDS02791.1|PL14_3 1.73e-53 360 586 54 288
CDS05384.1|PL14_3 1.38e-50 369 583 64 286
BAE81787.1|PL14|4.2.2.26 3.05e-39 363 584 39 263
UOH83040.1|PL14_3 4.08e-39 381 583 135 349
AFQ98373.1|PL14 7.85e-39 346 584 19 262

PDB Hits      download full data without filtering help

Created with Snap2958871171461752052342632933223513804104394684985275563735835GMT_A3505863A0N_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5GMT_A 1.94e-29 373 583 46 270
Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai [Aplysia kurodai],5GMT_B Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai [Aplysia kurodai]
3A0N_A 1.54e-14 350 586 5 243
Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3GNE_A Crystal structure of alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3GNE_B Crystal structure of alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3IM0_A Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0) [Paramecium bursaria Chlorella virus CVK2]

Swiss-Prot Hits      help

TPX38650.1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.002136 0.997837 CS pos: 21-22. Pr: 0.9688

TMHMM  Annotations      help

There is no transmembrane helices in TPX38650.1.