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CAZyme Information: SPSK_05216-t39_1-p1

You are here: Home > Sequence: SPSK_05216-t39_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Sporothrix schenckii
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Sporothrix; Sporothrix schenckii
CAZyme ID SPSK_05216-t39_1-p1
CAZy Family GH18|CBM24
CAZyme Description extracellular rhamnogalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
476 AXCR01000012|CGC5 50293.91 7.1056
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Sschenckii1099-18 10434 1397361 141 10293
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.171:11

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 80 390 4.3e-50 0.9692307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 9.04e-15 143 389 59 315
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 1.44e-12 145 391 151 411
Probable polygalacturonase
215540 PLN03010 6.08e-12 57 392 48 392
polygalacturonase
177865 PLN02218 7.52e-10 48 367 60 401
polygalacturonase ADPG
165802 PLN02155 1.92e-08 52 392 24 381
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.75e-180 18 470 3 449
1.75e-180 18 470 3 449
1.75e-180 18 470 3 449
5.97e-180 26 461 14 443
4.52e-179 35 463 17 441

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.02e-173 36 463 1 422
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
3.85e-18 68 388 28 373
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.84e-182 18 473 6 455
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1
1.57e-181 18 473 6 455
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1
5.75e-178 18 473 6 455
Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1
1.14e-176 28 461 14 445
Probable rhamnogalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgB PE=3 SV=1
5.59e-176 24 468 6 445
Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001223 0.998753 CS pos: 35-36. Pr: 0.9591

TMHMM  Annotations      help

There is no transmembrane helices in SPSK_05216-t39_1-p1.