logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: SPSK_05138-t39_1-p1

You are here: Home > Sequence: SPSK_05138-t39_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Sporothrix schenckii
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Sporothrix; Sporothrix schenckii
CAZyme ID SPSK_05138-t39_1-p1
CAZy Family GH18
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
545 58600.89 6.3295
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Sschenckii1099-18 10434 1397361 141 10293
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in SPSK_05138-t39_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 190 523 1.1e-67 0.9569230769230769

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.04e-35 251 523 49 319
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580 PLN03003 1.34e-32 241 534 99 393
Probable polygalacturonase At3g15720
177865 PLN02218 1.44e-32 248 530 149 431
polygalacturonase ADPG
215426 PLN02793 2.45e-31 216 516 113 406
Probable polygalacturonase
215120 PLN02188 1.60e-30 175 520 51 391
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.35e-197 172 544 53 425
4.68e-179 171 544 32 402
3.00e-146 175 453 53 331
4.81e-108 165 544 31 438
2.10e-103 175 544 42 438

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.63e-38 172 530 27 383
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
4.59e-18 250 529 73 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
6.17e-18 250 529 73 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
1.84e-17 250 529 65 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.12e-16 252 524 71 338
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.90e-64 175 530 45 416
Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2
1.12e-63 175 530 66 437
Exopolygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGX1 PE=3 SV=1
2.69e-58 175 506 59 408
Probable exopolygalacturonase X OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaX PE=3 SV=1
3.66e-58 175 519 61 422
Probable exopolygalacturonase X OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaX PE=3 SV=2
2.09e-56 175 530 61 432
Exopolygalacturonase X-1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaX-1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.301445 0.698524 CS pos: 22-23. Pr: 0.4008

TMHMM  Annotations      help

There is no transmembrane helices in SPSK_05138-t39_1-p1.