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CAZyme Information: SPBR_07126-t41_1-p1

You are here: Home > Sequence: SPBR_07126-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Sporothrix brasiliensis
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Sporothrix; Sporothrix brasiliensis
CAZyme ID SPBR_07126-t41_1-p1
CAZy Family GT15
CAZyme Description extracellular rhamnogalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
476 AWTV01000009|CGC24 50318.94 6.9660
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Sbrasiliensis5110 9231 1398154 140 9091
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.171:11

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 80 390 9.1e-50 0.9692307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.50e-15 143 395 59 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 2.10e-12 145 391 151 411
Probable polygalacturonase
215540 PLN03010 7.33e-12 57 394 48 394
polygalacturonase
177865 PLN02218 1.46e-09 48 396 60 427
polygalacturonase ADPG
165802 PLN02155 7.16e-08 52 392 24 381
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.47e-180 18 470 3 449
2.47e-180 18 470 3 449
2.47e-180 18 470 3 449
1.70e-179 26 461 14 443
3.30e-178 17 471 5 452

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.10e-174 36 463 1 422
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
1.68e-17 68 388 28 373
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.11e-181 18 473 6 455
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1
2.23e-181 18 473 6 455
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1
8.15e-178 18 473 6 455
Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1
3.99e-177 23 469 5 453
Probable rhamnogalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgB PE=3 SV=1
7.52e-176 35 470 20 451
Probable rhamnogalacturonase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rhgB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001372 0.998578 CS pos: 35-36. Pr: 0.9598

TMHMM  Annotations      help

There is no transmembrane helices in SPBR_07126-t41_1-p1.