logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: SPBR_04201-t41_1-p1

You are here: Home > Sequence: SPBR_04201-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Sporothrix brasiliensis
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Sporothrix; Sporothrix brasiliensis
CAZyme ID SPBR_04201-t41_1-p1
CAZy Family GH28
CAZyme Description cellulosome enzyme
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
500 AWTV01000005|CGC4 52729.01 5.0731
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Sbrasiliensis5110 9231 1398154 140 9091
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8:3 3.2.1.-:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH30 27 496 1e-163 0.9887133182844243

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
227807 XynC 7.87e-28 28 464 36 417
O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis].
396577 Glyco_hydro_59 1.17e-11 40 394 2 293
Glycosyl hydrolase family 59.
405300 Glyco_hydr_30_2 8.42e-11 28 356 4 355
O-Glycosyl hydrolase family 30.
307945 Glyco_hydro_30 6.88e-10 138 280 96 236
Glycosyl hydrolase family 30 TIM-barrel domain.
407314 Glyco_hydro_30C 9.89e-06 399 464 1 62
Glycosyl hydrolase family 30 beta sandwich domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.48e-138 28 484 21 453
1.61e-133 12 496 11 466
5.80e-131 27 499 51 494
1.22e-126 4 473 5 448
1.22e-126 4 473 5 448

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.14e-127 25 473 2 424
Chain A, GH30 family xylanase [Thermothelomyces thermophilus ATCC 42464],7O0E_G Chain G, GH30 family xylanase [Thermothelomyces thermophilus ATCC 42464]
4.47e-126 25 473 9 431
Chain AAA, GH30 family xylanase [Thermothelomyces thermophilus ATCC 42464]
2.38e-99 26 495 93 539
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris [Saccharomyces uvarum],6KRN_A Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris in complex with aldotriuronic acid [Saccharomyces uvarum]
2.46e-99 27 495 23 468
Chain A, GH30 Xylanase B [Talaromyces cellulolyticus CF-2612],6IUJ_B Chain B, GH30 Xylanase B [Talaromyces cellulolyticus CF-2612]
1.08e-95 25 459 22 417
Chain A, GH30 Xylanase C [Talaromyces cellulolyticus CF-2612],6M5Z_B Chain B, GH30 Xylanase C [Talaromyces cellulolyticus CF-2612]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.17e-127 4 473 5 448
GH30 family xylanase OS=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) OX=573729 GN=Xyn30A PE=1 SV=1
1.30e-12 22 441 81 483
Putative glucosylceramidase 1 OS=Caenorhabditis elegans OX=6239 GN=gba-1 PE=1 SV=2
1.22e-11 22 280 81 333
Putative glucosylceramidase 2 OS=Caenorhabditis elegans OX=6239 GN=gba-2 PE=3 SV=2
1.24e-11 28 472 36 395
Glucuronoxylanase XynC OS=Bacillus subtilis (strain 168) OX=224308 GN=xynC PE=1 SV=1
6.66e-11 27 448 87 495
Putative glucosylceramidase 4 OS=Caenorhabditis elegans OX=6239 GN=gba-4 PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000495 0.999479 CS pos: 18-19. Pr: 0.9880

TMHMM  Annotations      help

There is no transmembrane helices in SPBR_04201-t41_1-p1.