logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: SDRG_16535-t26_1-p1

You are here: Home > Sequence: SDRG_16535-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Saprolegnia diclina
Lineage Oomycota; NA; ; Saprolegniaceae; Saprolegnia; Saprolegnia diclina
CAZyme ID SDRG_16535-t26_1-p1
CAZy Family GT48
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
313 33462.68 7.3756
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_SdiclinaVS20 17448 1156394 89 17359
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in SDRG_16535-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 6 219 3.2e-71 0.8326530612244898

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395595 CBM_1 6.72e-07 277 304 2 29
Fungal cellulose binding domain.
197593 fCBD 1.79e-06 277 308 3 34
Fungal-type cellulose-binding domain. Small four-cysteine cellulose-binding domain of fungi
273167 rad23 4.35e-04 181 228 77 120
UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
235540 PRK05641 0.002 180 233 36 90
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
197593 fCBD 0.006 232 264 1 33
Fungal-type cellulose-binding domain. Small four-cysteine cellulose-binding domain of fungi

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.50e-225 1 313 1 313
3.11e-158 4 313 5 321
2.02e-87 4 270 8 266
1.14e-81 12 264 15 272
3.91e-79 1 264 5 272

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.82e-14 18 184 1 172
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

SDRG_16535-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000282 0.999675 CS pos: 17-18. Pr: 0.9815

TMHMM  Annotations      help

There is no transmembrane helices in SDRG_16535-t26_1-p1.