CAZyme Information: SDRG_12893-t26_1-p1

Basic Information

• Species: Saprolegnia diclina
• Lineage: Oomycota; NA; ; Saprolegniaceae; Saprolegnia; Saprolegnia diclina
• CAZyme ID: SDRG_12893-t26_1-p1
• CAZy Family: GT1
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
867	JH767184|CGC2	89388.65	7.2625

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_SdiclinaVS20	17448	1156394	89	17359

• Gene Location: location=JH767184:245979-248582(+)

Full Sequence      

MGNTTSYGLAMISLGVAMADTYDVIVVGSGPGGLVAAEYLSRNASLSVLVLEAGLPTLAA
SGGNNIPGYAQSQGLTVFDIPGEYTNIAFGGNAAYRYGTDWVSSPTGLYLGKCVGGSSSL
NGMLYFRTPDSYVTEASWPNDVATVNAGFSAIETMFTFGYNPSPDGVRYNQQAYTIMRAV
LGNGGGYTETQAINTDRNAKSKSYGHPPFAIKNGLRDSPAKTFLGAAKARPNFKLISSAT
VSYIIQSKGTATGVVYTVNGQTVTASLSGKSAVIVAGGAAMTPKILMQSGVGPSSQLNVL
KSRGNAPGVSGDAANWVVNENVGDSMFDSQQLLMTFSRNDMVSFSYSQSQTAAITQYMTQ
GHSGPWASPDPVLIAYENYNFGGRAYQFQVTSFSHGFNWGSNNPTEFGVAVYVNNPISRD
SARFSGDGGYHLDTAHSMYSNPTDRAAVANYLDKLRGWMSSQGVTQVVPNAGVSSIDFVN
ANIQGANHYGGSCYASGDGSDAKRCADETLRVVGAKNIYVGDASLMKTGTVNPYGFIMYA
GYQTGVNVAKAIASGSTPVTPTPPGSCSNLQSDLDYFGNDIKSTSRASANDCCGDCAATA
GCALYVWTGDNGGTCWLKSAAGAPSSKPGAKSGFRGTVTPTPPGSCTNLQSDLDYFGNDI
KSTLRTSANDCCGDCAATAGCVLYVWTNSAGGTCWLKNAAGAVSSKPGAKSGFRDSVTPT
PTVTTAPPLAACGAPLANTDFDGQDVGNVPGGTPAVCCAACQSNPACNAYSIWNNICWLK
SGSNAPRSALGVVAATVNKCSALESNVDYSGNDLSNAPAVAATGCCALCRNTLGCKAFSW
FQSVCYLKSAKGASIAKAGVISAAVLA

Enzyme Prediction     

EC	1.1.99.18:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	17	548	3e-124	0.9708029197080292

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	1.46e-34	16	538	2	523	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	2.89e-22	18	528	2	510	choline dehydrogenase; Validated
366272	GMC_oxred_N	3.04e-17	111	296	24	207	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
238533	APPLE_Factor_XI_like	3.45e-12	798	866	3	73	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
238533	APPLE_Factor_XI_like	5.92e-11	563	635	1	72	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AIG55821.1|AA3_1	0.0	1	866	1	952
AIG55859.1|AA3_1	0.0	1	866	1	952
AIG55589.1|AA3_1	1.40e-265	18	530	18	526
AIG55820.1|AA3_1	1.14e-241	1	563	1	565
UIZ20744.1|AA3_1	6.43e-149	20	632	27	634

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1KDG_A	1.07e-43	19	555	5	545	Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1NAA_A	2.45e-43	22	555	3	540	Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
4QI7_A	8.99e-34	4	558	216	773	Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]
4QI4_A	1.03e-28	21	540	7	534	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI6_A	1.51e-28	10	540	218	756	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q01738|CDH_PHACH	6.49e-42	19	555	232	772	Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
sp|Q7MF12|BETA_VIBVY	5.48e-17	18	528	1	509	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1
sp|Q8D3K2|BETA_VIBVU	3.88e-16	18	528	1	509	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
sp|Q5B8A1|PKFF_EMENI	4.10e-15	21	556	40	611	Dehydrogenase pkfF OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pkfF PE=2 SV=1
sp|Q9X2M2|BETA_STAXY	1.10e-14	18	309	1	291	Oxygen-dependent choline dehydrogenase OS=Staphylococcus xylosus OX=1288 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
0.782326	0.217665

TMHMM  Annotations     

There is no transmembrane helices in SDRG_12893-t26_1-p1.