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CAZyme Information: SDRG_00959-t26_1-p1

You are here: Home > Sequence: SDRG_00959-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Saprolegnia diclina
Lineage Oomycota; NA; ; Saprolegniaceae; Saprolegnia; Saprolegnia diclina
CAZyme ID SDRG_00959-t26_1-p1
CAZy Family AA17
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
308 33399.14 7.8675
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_SdiclinaVS20 17448 1156394 89 17359
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.11:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL7 25 260 6.6e-29 0.9913419913419913

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
400923 Alginate_lyase2 7.28e-26 24 260 1 222
Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.19e-121 6 283 3 283
2.22e-19 20 257 23 236
8.63e-19 6 241 16 222
1.52e-18 17 260 73 296
9.91e-18 13 260 17 240

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.91e-17 15 260 53 268
Alginate lyase AlgAT5 from Polysaccharide Lyase family 7 [Defluviitalea]
3.56e-06 25 163 2 120
Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1],1VAV_B Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits      help

SDRG_00959-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000333 0.999641 CS pos: 16-17. Pr: 0.9620

TMHMM  Annotations      help

There is no transmembrane helices in SDRG_00959-t26_1-p1.