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CAZyme Information: SAPIO_CDS6393-t41_1-p1

You are here: Home > Sequence: SAPIO_CDS6393-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Scedosporium apiospermum
Lineage Ascomycota; Sordariomycetes; ; Microascaceae; Scedosporium; Scedosporium apiospermum
CAZyme ID SAPIO_CDS6393-t41_1-p1
CAZy Family GH43
CAZyme Description Lignostilbene alpha-beta-dioxygenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1003 JOWA01000103|CGC3 112201.01 5.9555
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_SapiospermumIHEM14462 10920 N/A 2544 8376
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in SAPIO_CDS6393-t41_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA4 689 996 3.4e-58 0.5670498084291188

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397263 RPE65 6.61e-140 36 456 8 411
Retinal pigment epithelial membrane protein. This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria.
226196 COG3670 3.71e-71 16 448 18 444
Carotenoid cleavage dioxygenase or a related enzyme [Secondary metabolites biosynthesis, transport and catabolism].
215145 PLN02258 2.43e-47 19 451 114 544
9-cis-epoxycarotenoid dioxygenase NCED
215271 PLN02491 1.26e-36 35 446 68 490
carotenoid 9,10(9',10')-cleavage dioxygenase
396238 FAD_binding_4 9.73e-27 569 683 1 112
FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.26e-246 509 996 1 533
1.03e-232 522 994 11 525
1.65e-231 522 994 11 525
2.09e-162 524 993 18 534
2.94e-162 524 993 18 534

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.64e-184 9 458 25 483
Chain A, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8X_B Chain B, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8X_C Chain C, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8X_D Chain D, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8Y_A Crystal structure of Co-CAO1 [Neurospora crassa OR74A],5U8Y_B Crystal structure of Co-CAO1 [Neurospora crassa OR74A],5U8Y_C Crystal structure of Co-CAO1 [Neurospora crassa OR74A],5U8Y_D Crystal structure of Co-CAO1 [Neurospora crassa OR74A],5U8Z_A Chain A, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8Z_B Chain B, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8Z_C Chain C, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U8Z_D Chain D, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U90_A Crystal structure of Co-CAO1 in complex with resveratrol [Neurospora crassa OR74A],5U90_B Crystal structure of Co-CAO1 in complex with resveratrol [Neurospora crassa OR74A],5U90_C Crystal structure of Co-CAO1 in complex with resveratrol [Neurospora crassa OR74A],5U90_D Crystal structure of Co-CAO1 in complex with resveratrol [Neurospora crassa OR74A],5U97_A Chain A, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U97_B Chain B, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U97_C Chain C, Carotenoid oxygenase 1 [Neurospora crassa OR74A],5U97_D Chain D, Carotenoid oxygenase 1 [Neurospora crassa OR74A],6B86_A 2.2A Crystal Structure of Co-CAO1 [Neurospora crassa OR74A],6B86_B 2.2A Crystal Structure of Co-CAO1 [Neurospora crassa OR74A],6B86_C 2.2A Crystal Structure of Co-CAO1 [Neurospora crassa OR74A],6B86_D 2.2A Crystal Structure of Co-CAO1 [Neurospora crassa OR74A],6N21_A Structure of wild-type CAO1 [Neurospora crassa],6N21_B Structure of wild-type CAO1 [Neurospora crassa],6N21_C Structure of wild-type CAO1 [Neurospora crassa],6N21_D Structure of wild-type CAO1 [Neurospora crassa]
4.64e-184 9 458 25 483
Structure of L509V CAO1 - growth condition 1 [Neurospora crassa],6N1Y_B Structure of L509V CAO1 - growth condition 1 [Neurospora crassa],6N1Y_C Structure of L509V CAO1 - growth condition 1 [Neurospora crassa],6N1Y_D Structure of L509V CAO1 - growth condition 1 [Neurospora crassa],6N20_A Structure of L509V CAO1 - growth condition 2 [Neurospora crassa],6N20_B Structure of L509V CAO1 - growth condition 2 [Neurospora crassa],6N20_C Structure of L509V CAO1 - growth condition 2 [Neurospora crassa],6N20_D Structure of L509V CAO1 - growth condition 2 [Neurospora crassa]
3.28e-127 12 458 23 467
Crystal structure of Pseudomonas brassicacearum lignostilbene dioxygenase [Pseudomonas brassicacearum],5V2D_B Crystal structure of Pseudomonas brassicacearum lignostilbene dioxygenase [Pseudomonas brassicacearum],5V2D_C Crystal structure of Pseudomonas brassicacearum lignostilbene dioxygenase [Pseudomonas brassicacearum],5V2D_D Crystal structure of Pseudomonas brassicacearum lignostilbene dioxygenase [Pseudomonas brassicacearum]
6.88e-108 14 454 3 439
Crystal structure of Sphingomonas paucimobilis TMY1009 holo-LsdA [Sphingomonas paucimobilis],6OJW_B Crystal structure of Sphingomonas paucimobilis TMY1009 holo-LsdA [Sphingomonas paucimobilis]
7.10e-108 14 454 3 439
Crystal structure of Sphingomonas paucimobilis TMY1009 LsdA phenylazophenol complex [Sphingomonas paucimobilis],6OJT_B Crystal structure of Sphingomonas paucimobilis TMY1009 LsdA phenylazophenol complex [Sphingomonas paucimobilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.13e-107 14 454 4 440
Lignostilbene-alpha,beta-dioxygenase isozyme I OS=Sphingomonas paucimobilis OX=13689 PE=1 SV=1
4.78e-96 14 451 4 442
Lignostilbene-alpha,beta-dioxygenase isozyme III OS=Sphingomonas paucimobilis OX=13689 GN=lsdB PE=1 SV=1
1.84e-67 500 996 1 551
Vanillyl-alcohol oxidase OS=Penicillium simplicissimum OX=69488 GN=VAOA PE=1 SV=1
5.47e-59 569 993 58 515
4-cresol dehydrogenase [hydroxylating] flavoprotein subunit OS=Pseudomonas putida OX=303 GN=pchF PE=1 SV=3
1.64e-40 19 451 95 534
9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NCED4 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000062 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in SAPIO_CDS6393-t41_1-p1.