logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RhiirA1_482055-t46_1-p1

You are here: Home > Sequence: RhiirA1_482055-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Rhizophagus irregularis
Lineage Mucoromycota; Glomeromycetes; ; Glomeraceae; Rhizophagus; Rhizophagus irregularis
CAZyme ID RhiirA1_482055-t46_1-p1
CAZy Family GT2
CAZyme Description LST-domain-containing protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
213 25177.86 4.9618
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RirregularisA1DAOM664342 26582 N/A 106 26476
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RhiirA1_482055-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT100 97 191 1.7e-29 0.4099099099099099

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
399987 A-2_8-polyST 1.78e-06 25 188 132 306
Alpha-2,8-polysialyltransferase (POLYST). This family contains the bacterial enzyme alpha-2,8-polysialyltransferase (EC:2.4.99.-) (approximately 500 residues long). This catalyzes the polycondensation of alpha-2,8-linked sialic acid required for the synthesis of polysialic acid (PSA).
400326 Glyco_transf_52 1.05e-04 78 200 152 267
Glycosyltransferase family 52. This family features glycosyltransferases belonging to glycosyltransferase family 52, which have alpha-2,3- sialyltransferase (EC:4.2.99.4) and alpha-glucosyltransferase (EC 2.4.1.-) activity. For example, beta-galactoside alpha-2,3- sialyltransferase expressed by Neisseria meningitidis is a member of this family and is involved in a step of lipooligosaccharide biosynthesis requiring sialic acid transfer; these lipooligosaccharides are thought to be important in the process of pathogenesis. This family includes several bacterial lipooligosaccharide sialyltransferases similar to the Haemophilus ducreyi LST protein. Haemophilus ducreyi is the cause of the sexually transmitted disease chancroid and produces a lipooligosaccharide (LOS) containing a terminal sialyl N-acetyllactosamine trisaccharide.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.41e-22 15 200 86 302
2.41e-22 15 200 86 302
2.41e-22 15 200 86 302
2.41e-22 15 200 86 302
2.41e-22 15 200 86 302

PDB Hits      help

RhiirA1_482055-t46_1-p1 has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.78e-08 26 187 131 276
Uncharacterized protein HI_0871 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0871 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999901 0.000119

TMHMM  Annotations      help

There is no transmembrane helices in RhiirA1_482055-t46_1-p1.