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CAZyme Information: RVD88889.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Arthrobotrys flagrans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Orbiliomycetes; ; Orbiliaceae; Arthrobotrys; Arthrobotrys flagrans | |||||||||||
| CAZyme ID | RVD88889.1 | |||||||||||
| CAZy Family | GT2 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.67:7 | 3.2.1.-:2 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 100 | 440 | 2.6e-71 | 0.9230769230769231 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 2.99e-39 | 147 | 436 | 46 | 314 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215426 | PLN02793 | 1.32e-28 | 60 | 434 | 47 | 406 | Probable polygalacturonase |
| 215120 | PLN02188 | 6.64e-27 | 70 | 436 | 44 | 389 | polygalacturonase/glycoside hydrolase family protein |
| 178580 | PLN03003 | 1.64e-23 | 156 | 429 | 117 | 364 | Probable polygalacturonase At3g15720 |
| 215540 | PLN03010 | 3.02e-23 | 69 | 438 | 53 | 390 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 447 | 1 | 450 | |
| 5.86e-178 | 29 | 447 | 21 | 447 | |
| 5.41e-149 | 5 | 437 | 5 | 429 | |
| 1.00e-143 | 49 | 446 | 39 | 436 | |
| 4.11e-143 | 14 | 442 | 14 | 440 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.26e-59 | 76 | 441 | 30 | 378 | Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
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| 9.02e-19 | 128 | 394 | 45 | 306 | Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides] |
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| 3.12e-17 | 75 | 407 | 13 | 312 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 3.12e-17 | 75 | 407 | 13 | 312 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 3.88e-17 | 75 | 407 | 5 | 304 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.78e-144 | 49 | 446 | 39 | 436 | Exopolygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGX1 PE=3 SV=1 |
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| 2.37e-141 | 63 | 447 | 48 | 432 | Probable exopolygalacturonase X OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pgaX PE=3 SV=2 |
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| 2.37e-141 | 63 | 447 | 48 | 432 | Probable exopolygalacturonase X OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pgaX PE=3 SV=2 |
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| 3.11e-139 | 63 | 447 | 48 | 432 | Probable exopolygalacturonase X OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaX PE=3 SV=2 |
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| 2.83e-135 | 59 | 447 | 45 | 432 | Probable exopolygalacturonase X OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaX PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000695 | 0.999263 | CS pos: 19-20. Pr: 0.9596 |