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CAZyme Information: RVD88783.1

You are here: Home > Sequence: RVD88783.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Arthrobotrys flagrans
Lineage Ascomycota; Orbiliomycetes; ; Orbiliaceae; Arthrobotrys; Arthrobotrys flagrans
CAZyme ID RVD88783.1
CAZy Family GT2
CAZyme Description CBM1 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A437ABZ3]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
380 SAEB01000003|CGC26 40395.69 7.7974
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AflagransCBSH-5679 9927 N/A 30 9897
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RVD88783.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 141 313 7.4e-49 0.8465346534653465
CBM1 24 51 7.8e-16 0.9310344827586207

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
226384 PelB 2.10e-53 115 371 63 339
Pectate lyase [Carbohydrate transport and metabolism].
214765 Amb_all 3.19e-39 143 314 11 190
Amb_all domain.
366158 Pec_lyase_C 4.85e-17 143 310 29 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
395595 CBM_1 1.28e-14 24 51 2 29
Fungal cellulose binding domain.
197593 fCBD 2.95e-14 24 55 3 34
Fungal-type cellulose-binding domain. Small four-cysteine cellulose-binding domain of fungi

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.37e-226 1 380 1 380
1.37e-125 84 378 26 318
1.20e-114 84 378 20 310
1.68e-112 85 378 372 666
2.28e-106 85 380 486 782

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.75e-34 94 286 15 212
Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
1.51e-21 88 285 6 244
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]
3.64e-21 92 313 6 249
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
5.79e-20 144 286 128 300
Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
2.85e-12 143 294 101 255
VexL: A periplasmic depolymerase provides new insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides [Achromobacter denitrificans]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.06e-35 94 286 40 237
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1
5.69e-35 94 286 42 239
Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1
4.67e-31 89 371 43 334
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
4.67e-31 89 371 43 334
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
4.67e-31 89 371 43 334
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000288 0.999674 CS pos: 19-20. Pr: 0.9802

TMHMM  Annotations      help

There is no transmembrane helices in RVD88783.1.