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CAZyme Information: RVD85296.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Arthrobotrys flagrans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Orbiliomycetes; ; Orbiliaceae; Arthrobotrys; Arthrobotrys flagrans | |||||||||||
| CAZyme ID | RVD85296.1 | |||||||||||
| CAZy Family | GH2 | |||||||||||
| CAZyme Description | Amb_all domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A437A2C6] | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 155 | 382 | 1.2e-48 | 0.9906103286384976 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 2.65e-29 | 163 | 336 | 11 | 164 | Amb_all domain. |
| 226384 | PelB | 6.54e-28 | 153 | 383 | 86 | 274 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 1.34e-19 | 158 | 335 | 24 | 188 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 19 | 508 | 2 | 491 | |
| 8.84e-140 | 16 | 503 | 507 | 974 | |
| 2.58e-134 | 1 | 504 | 1 | 479 | |
| 4.14e-133 | 10 | 504 | 9 | 479 | |
| 5.86e-133 | 10 | 504 | 9 | 479 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.38e-29 | 38 | 339 | 17 | 305 | Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
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| 8.94e-26 | 158 | 382 | 77 | 287 | Chain A, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi] |
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| 7.67e-25 | 158 | 382 | 77 | 287 | Chain A, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi] |
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| 2.39e-24 | 153 | 335 | 65 | 246 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
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| 6.70e-20 | 151 | 337 | 148 | 355 | Structure of Pectate Lyase from Acidovorax avenae subsp citrulli [Acidovorax citrulli AAC00-1],4HWV_B Structure of Pectate Lyase from Acidovorax avenae subsp citrulli [Acidovorax citrulli AAC00-1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.37e-24 | 153 | 335 | 101 | 282 | Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1 |
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| 6.07e-24 | 158 | 382 | 109 | 319 | Pectate lyase A OS=Dickeya chrysanthemi OX=556 GN=pelA PE=1 SV=1 |
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| 1.27e-23 | 153 | 382 | 113 | 324 | Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=3 SV=1 |
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| 1.72e-23 | 153 | 382 | 113 | 324 | Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2 |
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| 1.85e-23 | 153 | 335 | 95 | 276 | Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000201 | 0.999765 | CS pos: 19-20. Pr: 0.9793 |