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CAZyme Information: RVD84818.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Arthrobotrys flagrans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Orbiliomycetes; ; Orbiliaceae; Arthrobotrys; Arthrobotrys flagrans | |||||||||||
| CAZyme ID | RVD84818.1 | |||||||||||
| CAZy Family | GH17 | |||||||||||
| CAZyme Description | Amb_all domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A437A0U2] | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.2:30 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 77 | 258 | 5.9e-85 | 0.994475138121547 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 5.49e-60 | 77 | 259 | 1 | 187 | Amb_all domain. |
| 226384 | PelB | 6.49e-53 | 37 | 319 | 34 | 342 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 1.55e-41 | 84 | 258 | 26 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.77e-112 | 13 | 322 | 10 | 314 | |
| 3.52e-112 | 11 | 322 | 13 | 324 | |
| 3.52e-112 | 11 | 322 | 13 | 324 | |
| 1.00e-111 | 9 | 322 | 11 | 324 | |
| 2.91e-111 | 12 | 320 | 12 | 333 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.04e-39 | 39 | 317 | 6 | 321 | Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
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| 8.27e-38 | 34 | 236 | 5 | 246 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
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| 1.89e-28 | 36 | 236 | 10 | 213 | Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
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| 9.99e-27 | 88 | 237 | 128 | 302 | Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
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| 1.10e-23 | 26 | 236 | 3 | 257 | Chain A, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.06e-110 | 7 | 322 | 7 | 321 | Probable pectate lyase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyA PE=3 SV=1 |
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| 2.13e-110 | 7 | 322 | 7 | 321 | Probable pectate lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyA PE=3 SV=1 |
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| 3.48e-109 | 7 | 322 | 7 | 321 | Probable pectate lyase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyA PE=3 SV=1 |
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| 2.13e-108 | 9 | 322 | 10 | 323 | Probable pectate lyase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=plyA PE=3 SV=1 |
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| 4.28e-108 | 9 | 322 | 10 | 323 | Pectate lyase A OS=Aspergillus niger OX=5061 GN=plyA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000316 | 0.999660 | CS pos: 29-30. Pr: 0.6709 |