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CAZyme Information: RQM17988.1

You are here: Home > Sequence: RQM17988.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Peronospora effusa
Lineage Oomycota; NA; ; Peronosporaceae; Peronospora; Peronospora effusa
CAZyme ID RQM17988.1
CAZy Family GT60
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
407 44740.87 7.3619
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PeffusaR13 8603 N/A 0 8603
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RQM17988.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH105 60 400 3.2e-47 0.9397590361445783

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
226678 YesR 1.41e-29 132 402 103 357
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism].
400034 Glyco_hydro_88 9.20e-28 143 401 108 342
Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.20e-299 1 407 1 407
3.97e-114 31 400 1 359
2.47e-107 26 400 26 391
2.40e-106 28 400 31 394
8.16e-105 28 400 12 376

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.05e-32 106 399 74 359
Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824]
4.88e-28 145 399 114 355
Chain A, Putative glycosyl hydrolase yteR [Bacillus subtilis]
5.68e-28 145 399 124 365
Structure of Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.92e-27 145 399 124 365
Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1
4.17e-16 181 397 20 227
Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1
4.17e-16 181 397 20 227
24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000321 0.999640 CS pos: 19-20. Pr: 0.9773

TMHMM  Annotations      help

There is no transmembrane helices in RQM17988.1.