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CAZyme Information: RQM17218.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Peronospora effusa | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Peronospora; Peronospora effusa | |||||||||||
| CAZyme ID | RQM17218.1 | |||||||||||
| CAZy Family | GT48 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 223587 | SrmB | 6.57e-112 | 650 | 1120 | 27 | 483 | Superfamily II DNA and RNA helicase [Replication, recombination and repair]. |
| 350715 | DEADc_DDX52 | 1.51e-89 | 672 | 872 | 1 | 198 | DEAD-box helicase domain of DEAD box protein 52. DDX52 (also called ROK1 and HUSSY19) is ubiquitously expressed in testis, endometrium, and other tissues in humans. DDX52 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region. |
| 236877 | PRK11192 | 4.88e-75 | 652 | 1123 | 1 | 427 | ATP-dependent RNA helicase SrmB; Provisional |
| 236977 | PRK11776 | 4.70e-69 | 672 | 1028 | 15 | 363 | ATP-dependent RNA helicase DbpA; Provisional |
| 236722 | PRK10590 | 2.92e-68 | 672 | 1117 | 12 | 455 | ATP-dependent RNA helicase RhlE; Provisional |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 5.58e-243 | 1 | 397 | 1 | 359 | |
| 5.46e-47 | 575 | 1052 | 891 | 1365 | |
| 2.40e-41 | 629 | 1015 | 55 | 458 | |
| 4.55e-36 | 664 | 1013 | 12 | 363 | |
| 1.03e-33 | 668 | 1022 | 102 | 448 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.27e-52 | 629 | 1015 | 36 | 440 | Structure of the spliceosomal DEAD-box protein Prp28 [Homo sapiens] |
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| 1.72e-52 | 638 | 1037 | 36 | 432 | Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA and AMPPNP [Bombyx mori],4D26_A Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA,ADP and Pi [Bombyx mori] |
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| 3.24e-50 | 629 | 1015 | 368 | 772 | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex [Homo sapiens],6AH0_X The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) [Homo sapiens],6QW6_5X Chain 5X, Probable ATP-dependent RNA helicase DDX23 [Homo sapiens],6QX9_5X Chain 5X, Probable ATP-dependent RNA helicase DDX23 [Homo sapiens] |
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| 4.69e-49 | 638 | 1037 | 42 | 431 | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa [Drosophila melanogaster],2DB3_B Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa [Drosophila melanogaster],2DB3_C Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa [Drosophila melanogaster],2DB3_D Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa [Drosophila melanogaster] |
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| 1.97e-48 | 640 | 1037 | 3 | 406 | Crystal Structure of human DEAD-box RNA helicase DDX3X [Homo sapiens] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 9.20e-117 | 623 | 1078 | 87 | 541 | ATP-dependent RNA helicase ROK1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1 |
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| 1.21e-113 | 641 | 1078 | 105 | 539 | ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1 |
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| 3.94e-113 | 634 | 1078 | 84 | 525 | ATP-dependent RNA helicase ROK1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3 SV=2 |
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| 1.20e-112 | 629 | 1053 | 172 | 586 | Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1 |
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| 8.30e-112 | 634 | 1078 | 92 | 534 | ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000044 | 0.000001 |