logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RQM17217.1

You are here: Home > Sequence: RQM17217.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Peronospora effusa
Lineage Oomycota; NA; ; Peronosporaceae; Peronospora; Peronospora effusa
CAZyme ID RQM17217.1
CAZy Family GT48
CAZyme Description Apple domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A425CJM8]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
638 68394.07 6.9587
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PeffusaR13 8603 N/A 0 8603
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 24 547 2e-106 0.968978102189781

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 9.03e-34 29 552 8 537
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 7.46e-17 25 297 2 279
choline dehydrogenase; Validated
238533 APPLE_Factor_XI_like 1.65e-12 565 635 1 70
Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
405052 PAN_4 1.79e-11 576 620 1 51
PAN domain.
366272 GMC_oxred_N 5.28e-11 110 292 21 204
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 638 1 638
1.09e-163 29 637 24 632
1.43e-153 13 638 9 633
1.69e-136 29 530 22 526
3.33e-131 8 541 4 542

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.31e-49 25 549 4 536
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.18e-48 29 549 3 531
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
6.65e-39 28 552 7 542
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
1.23e-38 28 549 229 760
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]
2.97e-38 28 552 229 764
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.57e-47 25 549 231 763
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
1.40e-16 29 361 41 378
Pyranose dehydrogenase 2 OS=Leucoagaricus meleagris OX=201219 GN=pdh2 PE=2 SV=1
3.25e-16 29 333 41 353
Pyranose dehydrogenase 3 OS=Leucoagaricus meleagris OX=201219 GN=pdh3 PE=2 SV=1
5.91e-16 23 524 42 590
GMC oxidoreductase family protein Mala s 12.0101 OS=Malassezia sympodialis OX=76777 PE=1 SV=2
5.91e-16 23 524 42 590
GMC oxidoreductase family protein Mala s 12 OS=Malassezia sympodialis (strain ATCC 42132) OX=1230383 GN=MSY001_2108 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000339 0.999664 CS pos: 25-26. Pr: 0.9740

TMHMM  Annotations      help

There is no transmembrane helices in RQM17217.1.