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CAZyme Information: RQM13996.1

You are here: Home > Sequence: RQM13996.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Peronospora effusa
Lineage Oomycota; NA; ; Peronosporaceae; Peronospora; Peronospora effusa
CAZyme ID RQM13996.1
CAZy Family GH5|CBM43
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
331 35449.46 4.6872
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PeffusaR13 8603 N/A 0 8603
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RQM13996.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 11 260 1.8e-61 0.9306122448979591

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
411345 gliding_GltJ 5.31e-05 247 331 424 505
adventurous gliding motility protein GltJ. Adventurous gliding motility protein GltJ, also known as AgmX, occurs in delta-proteobacteria such as Myxococcus xanthus.
411100 internalin_K 1.08e-04 247 292 513 558
class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.
236776 PRK10856 3.59e-04 247 316 167 235
cytoskeleton protein RodZ.
236776 PRK10856 6.82e-04 239 315 177 252
cytoskeleton protein RodZ.
405911 TALPID3 0.001 247 325 944 1031
Hedgehog signalling target. TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.24e-180 1 331 1 363
4.11e-130 1 216 1 216
7.75e-104 1 219 1 218
3.13e-103 1 219 1 218
4.44e-103 1 219 1 218

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.21e-15 22 191 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

RQM13996.1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000217 0.999782 CS pos: 17-18. Pr: 0.8717

TMHMM  Annotations      help

There is no transmembrane helices in RQM13996.1.