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CAZyme Information: RQM13256.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Peronospora effusa | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Peronospora; Peronospora effusa | |||||||||||
| CAZyme ID | RQM13256.1 | |||||||||||
| CAZy Family | GH31 | |||||||||||
| CAZyme Description | UBC core domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A3M6VKN2] | |||||||||||
| CAZyme Property |
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| Genome Property |
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CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395127 | UQ_con | 9.93e-50 | 4 | 142 | 1 | 139 | Ubiquitin-conjugating enzyme. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologs. TSG101 is one of several UBC homologs that lacks this active site cysteine. |
| 238117 | UBCc | 1.18e-48 | 3 | 142 | 2 | 141 | Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. |
| 227410 | COG5078 | 3.54e-47 | 3 | 144 | 8 | 149 | Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]. |
| 177768 | PLN00172 | 7.67e-45 | 3 | 144 | 4 | 144 | ubiquitin conjugating enzyme; Provisional |
| 214562 | UBCc | 1.27e-43 | 4 | 144 | 1 | 142 | Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 607 | 1 | 607 | |
| 2.48e-110 | 158 | 589 | 88 | 485 | |
| 4.87e-110 | 154 | 596 | 80 | 499 | |
| 1.89e-109 | 145 | 588 | 66 | 484 | |
| 1.89e-109 | 145 | 588 | 66 | 484 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5.63e-43 | 3 | 142 | 7 | 145 | Crystal structure of EhUbc5, a ubiquitin conjugating enzyme from Entamoeba histolytica [Entamoeba histolytica] |
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| 6.16e-41 | 3 | 144 | 24 | 164 | Crystal structure of a putative ubiquitin-conjugating enzyme E2 from Toxoplasma gondii [Toxoplasma gondii] |
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| 6.13e-38 | 2 | 144 | 4 | 145 | Ubiquitin Conjugating Enzyme [Saccharomyces cerevisiae] |
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| 8.29e-38 | 2 | 144 | 14 | 155 | Not4 ring domain in complex with Ubc4 [Saccharomyces cerevisiae S288C] |
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| 9.63e-38 | 3 | 144 | 4 | 144 | Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg [Schizosaccharomyces pombe 972h-] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.98e-41 | 3 | 144 | 5 | 145 | Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum OX=44689 GN=ubcB PE=1 SV=1 |
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| 2.31e-38 | 3 | 144 | 4 | 144 | Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides OX=474922 GN=UBC1 PE=2 SV=1 |
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| 2.31e-38 | 3 | 144 | 4 | 144 | Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=UBC1 PE=3 SV=2 |
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| 3.19e-38 | 3 | 144 | 4 | 144 | Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc4 PE=1 SV=1 |
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| 3.29e-38 | 2 | 144 | 4 | 145 | Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC5 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000061 | 0.000000 |