logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RQM12451.1

You are here: Home > Sequence: RQM12451.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Peronospora effusa
Lineage Oomycota; NA; ; Peronosporaceae; Peronospora; Peronospora effusa
CAZyme ID RQM12451.1
CAZy Family GH28
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
773 83715.99 5.4117
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PeffusaR13 8603 N/A 0 8603
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC - - -

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 488 739 1.1e-66 0.9224489795918367
AA17 17 262 1e-60 0.9142857142857143
AA17 297 477 1.1e-44 0.6693877551020408

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
183854 PRK13042 0.001 696 771 25 99
superantigen-like protein SSL4; Reviewed.
236090 PRK07764 0.001 693 762 431 500
DNA polymerase III subunits gamma and tau; Validated
237871 PRK14965 0.002 721 764 390 433
DNA polymerase III subunits gamma and tau; Provisional
411345 gliding_GltJ 0.002 693 764 405 462
adventurous gliding motility protein GltJ. Adventurous gliding motility protein GltJ, also known as AgmX, occurs in delta-proteobacteria such as Myxococcus xanthus.
235899 PRK06975 0.003 721 772 270 321
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
7.77e-72 8 690 11 603
6.19e-67 376 477 1 102
5.25e-66 291 477 1 195
7.31e-66 291 477 1 195
7.31e-66 291 477 1 195

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.38e-08 497 672 1 172
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

RQM12451.1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000470 0.999485 CS pos: 26-27. Pr: 0.5914

TMHMM  Annotations      download full data without filtering help

Start End
9 31