logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RO3G_10109-t26_1-p1

You are here: Home > Sequence: RO3G_10109-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Rhizopus delemar
Lineage Mucoromycota; Mucoromycetes; ; Rhizopodaceae; Rhizopus; Rhizopus delemar
CAZyme ID RO3G_10109-t26_1-p1
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
335 35774.04 9.7251
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RdelemarRA99-880 17703 246409 244 17459
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RO3G_10109-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE8 24 325 4.9e-74 0.9826388888888888

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
215357 PLN02665 9.08e-46 32 321 80 352
pectinesterase family protein
178051 PLN02432 1.87e-38 32 316 23 278
putative pectinesterase
215367 PLN02682 4.51e-36 32 334 82 364
pectinesterase family protein
178372 PLN02773 5.04e-35 32 291 17 263
pectinesterase
395871 Pectinesterase 6.68e-35 31 295 11 263
Pectinesterase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.39e-63 32 332 91 382
1.24e-57 32 332 1168 1461
7.84e-57 32 332 1107 1400
7.84e-57 32 332 1132 1425
7.84e-57 32 332 1132 1425

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.26e-28 31 303 18 271
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015]
2.26e-28 31 303 18 271
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015]
7.68e-24 32 326 19 304
Pectin methylesterase from Carrot [Daucus carota]
1.58e-20 32 303 15 274
Chain A, Pectinesterase 1 [Solanum lycopersicum]
1.03e-19 31 323 17 333
Chain A, Pectinesterase A [Dickeya dadantii 3937],2NSP_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NST_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NST_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NT6_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NT6_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NT9_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NT9_B Chain B, Pectinesterase A [Dickeya dadantii 3937]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.72e-31 32 332 101 380
Probable pectinesterase 15 OS=Arabidopsis thaliana OX=3702 GN=PME15 PE=2 SV=1
1.33e-28 32 318 76 343
Pectinesterase PPME1 OS=Arabidopsis thaliana OX=3702 GN=PPME1 PE=1 SV=1
3.69e-28 32 315 77 340
Pectinesterase 2 OS=Olea europaea OX=4146 PE=1 SV=1
9.77e-28 32 315 77 340
Pectinesterase 1 OS=Olea europaea OX=4146 PE=1 SV=1
1.02e-27 31 303 46 299
Probable pectinesterase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pmeA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000239 0.999726 CS pos: 21-22. Pr: 0.9746

TMHMM  Annotations      help

There is no transmembrane helices in RO3G_10109-t26_1-p1.