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CAZyme Information: RL4_JR_10113-RA-p1

You are here: Home > Sequence: RL4_JR_10113-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_10113-RA-p1
CAZy Family GT58
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
560 JACBXF010000100|CGC1 59578.81 8.0393
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RL4_JR_10113-RA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 22 557 7.3e-182 0.9762773722627737

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 3.51e-41 27 560 7 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 2.01e-25 28 556 6 532
choline dehydrogenase; Validated
398739 GMC_oxred_C 1.70e-17 482 551 78 143
GMC oxidoreductase. This domain found associated with pfam00732.
366272 GMC_oxred_N 8.40e-12 110 326 26 216
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
215420 PLN02785 4.16e-11 23 298 51 306
Protein HOTHEAD

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.39e-211 1 557 1 545
6.80e-211 1 557 1 545
9.65e-211 1 557 1 545
1.37e-210 1 557 1 545
2.86e-207 1 551 1 539

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.38e-93 17 557 220 765
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]
6.10e-89 27 557 7 544
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
8.14e-87 27 557 229 766
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
3.24e-82 28 557 3 536
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
3.67e-82 28 557 8 541
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.61e-79 28 557 235 768
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
6.74e-20 12 553 32 594
Fatty acid photodecarboxylase, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=FAP PE=1 SV=1
1.40e-19 24 556 1 531
Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum (strain SS9) OX=298386 GN=betA PE=3 SV=1
7.55e-19 24 556 1 531
Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
1.77e-18 24 556 1 531
Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000520 0.999441 CS pos: 23-24. Pr: 0.7178

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_10113-RA-p1.