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CAZyme Information: RL4_JR_09129-RA-p1

You are here: Home > Sequence: RL4_JR_09129-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_09129-RA-p1
CAZy Family GT2
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
414 43440.45 4.6817
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.4:18 3.2.1.73:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH7 19 412 1.7e-153 0.9927710843373494

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
153432 GH7_CBH_EG 0.0 24 406 1 386
Glycosyl hydrolase family 7. Glycosyl hydrolase family 7 contains eukaryotic endoglucanases (EGs) and cellobiohydrolases (CBHs) that hydrolyze glycosidic bonds using a double-displacement mechanism. This leads to a net retention of the conformation at the anomeric carbon. Both enzymes work synergistically in the degradation of cellulose,which is the main component of plant cell wall, and is composed of beta-1,4 linked glycosyl units. EG cleaves the beta-1,4 linkages of cellulose and CBH cleaves off cellobiose disaccharide units from the reducing end of the chain. In general, the O-glycosyl hydrolases are a widespread group of enzymes that hydrolyze the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycoside hydrolase family 7.
395677 Glyco_hydro_7 0.0 23 411 5 434
Glycosyl hydrolase family 7.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.10e-156 7 412 8 412
1.10e-156 7 412 8 412
5.52e-145 14 414 15 416
5.52e-145 14 414 15 416
5.52e-145 14 414 15 416

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.80e-157 23 412 6 395
Chain A, Glucanase [Rasamsonia emersonii],6SU8_B Chain B, Glucanase [Rasamsonia emersonii],6SU8_C Chain C, Glucanase [Rasamsonia emersonii]
3.03e-124 18 411 2 370
Chain A, ENDOGLUCANASE I [Trichoderma reesei],1EG1_C Chain C, ENDOGLUCANASE I [Trichoderma reesei]
4.24e-122 17 411 1 370
Crystal structure of Trichoderma harzianum endoglucanase I [Trichoderma harzianum],5W0A_B Crystal structure of Trichoderma harzianum endoglucanase I [Trichoderma harzianum]
1.61e-120 18 413 2 428
Chain A, EXOGLUCANASE I [Phanerodontia chrysosporium],1H46_X Chain X, EXOGLUCANASE I [Phanerodontia chrysosporium],1Z3T_A Chain A, cellulase [Phanerodontia chrysosporium],1Z3V_A Chain A, cellulase [Phanerodontia chrysosporium],1Z3W_A Chain A, cellulase [Phanerodontia chrysosporium]
7.19e-116 18 413 2 439
Structure of Cellobiohydrolase 1 (Cel7A) from Heterobasidion annosum [Heterobasidion annosum],2YG1_A APO STRUCTURE OF CELLOBIOHYDROLASE 1 (CEL7A) FROM HETEROBASIDION ANNOSUM [Heterobasidion annosum],2YG1_B APO STRUCTURE OF CELLOBIOHYDROLASE 1 (CEL7A) FROM HETEROBASIDION ANNOSUM [Heterobasidion annosum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.39e-148 8 413 10 413
Probable endo-beta-1,4-glucanase celB OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=celB PE=3 SV=1
9.81e-146 14 414 15 416
Endo-beta-1,4-glucanase celB OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=celB PE=1 SV=1
9.81e-146 14 414 15 416
Probable endo-beta-1,4-glucanase celB OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=celB PE=3 SV=1
4.85e-142 5 412 6 415
Probable endo-beta-1,4-glucanase celB OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=celB PE=3 SV=1
1.02e-140 14 413 16 406
Probable endo-beta-1,4-glucanase celB OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=celB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000196 0.999805 CS pos: 21-22. Pr: 0.9497

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_09129-RA-p1.