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CAZyme Information: RL4_JR_08749-RA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Raffaelea lauricola | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola | |||||||||||
| CAZyme ID | RL4_JR_08749-RA-p1 | |||||||||||
| CAZy Family | GT1 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.1.1.11:8 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CE8 | 27 | 305 | 6.2e-70 | 0.9444444444444444 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 178051 | PLN02432 | 1.44e-35 | 27 | 306 | 13 | 275 | putative pectinesterase |
| 178113 | PLN02497 | 1.99e-32 | 26 | 322 | 33 | 327 | probable pectinesterase |
| 215173 | PLN02304 | 1.59e-30 | 34 | 304 | 85 | 355 | probable pectinesterase |
| 215357 | PLN02665 | 1.92e-30 | 21 | 304 | 64 | 341 | pectinesterase family protein |
| 215367 | PLN02682 | 1.02e-28 | 35 | 304 | 81 | 348 | pectinesterase family protein |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.51e-138 | 5 | 326 | 5 | 326 | |
| 2.51e-138 | 5 | 326 | 5 | 326 | |
| 3.17e-134 | 5 | 326 | 5 | 326 | |
| 6.95e-131 | 1 | 326 | 1 | 326 | |
| 1.19e-110 | 16 | 326 | 18 | 330 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.01e-64 | 19 | 325 | 3 | 299 | Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015] |
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| 1.43e-64 | 19 | 325 | 3 | 299 | Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015] |
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| 1.93e-20 | 35 | 292 | 18 | 273 | Pectin methylesterase from Carrot [Daucus carota] |
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| 3.07e-16 | 35 | 270 | 14 | 248 | Chain A, Pectinesterase 1 [Solanum lycopersicum] |
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| 1.26e-10 | 36 | 292 | 48 | 366 | The structure of rice weevil pectin methyl esterase [Sitophilus oryzae] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7.89e-104 | 16 | 326 | 17 | 330 | Pectinesterase OS=Aspergillus niger OX=5061 GN=pme1 PE=1 SV=1 |
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| 1.93e-99 | 16 | 325 | 17 | 330 | Pectinesterase OS=Aspergillus aculeatus OX=5053 GN=pme1 PE=2 SV=1 |
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| 6.30e-69 | 17 | 325 | 27 | 325 | Pectinesterase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pmeA PE=1 SV=1 |
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| 4.82e-65 | 19 | 325 | 28 | 324 | Probable pectinesterase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pmeA PE=3 SV=1 |
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| 4.82e-65 | 19 | 325 | 28 | 324 | Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pmeA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000247 | 0.999714 | CS pos: 20-21. Pr: 0.6658 |