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CAZyme Information: RL4_JR_08623-RA-p1

You are here: Home > Sequence: RL4_JR_08623-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_08623-RA-p1
CAZy Family GH92
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
396 JACBXF010000035|CGC1 42064.20 5.0588
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.91:55 3.2.1.4:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH6 64 355 9.1e-84 0.95578231292517

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
396075 Glyco_hydro_6 9.86e-145 72 360 1 293
Glycosyl hydrolases family 6.
227616 CelA1 1.69e-37 46 395 24 442
Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.36e-212 1 396 1 395
1.36e-212 1 396 1 395
1.36e-212 1 396 1 395
1.36e-212 1 396 1 395
3.02e-202 1 396 1 395

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.28e-111 46 396 2 357
Crystal structure of a fungal chimeric cellobiohydrolase Cel6A [Humicola insolens]
5.16e-111 46 396 2 357
Crystal structure of a fungal chimeric cellobiohydrolase Cel6A [Humicola insolens]
7.65e-108 46 396 7 364
Chain A, Cellobiohydrolase Family 6 [Thermochaetoides thermophila]
1.48e-107 44 396 5 362
Chain A, CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II) [Trichoderma reesei],1QK0_B Chain B, CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II) [Trichoderma reesei],1QK2_A Chain A, CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II) [Trichoderma reesei],1QK2_B Chain B, CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II) [Trichoderma reesei]
1.58e-107 44 396 7 364
Chain A, CELLOBIOHYDROLASE II CORE PROTEIN [Trichoderma reesei]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.97e-194 6 395 7 396
1,4-beta-D-glucan cellobiohydrolase CEL6C OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) OX=515849 GN=CEL6C PE=1 SV=1
4.18e-116 39 396 105 468
Probable 1,4-beta-D-glucan cellobiohydrolase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=cbhC PE=3 SV=1
3.36e-114 32 396 94 464
Probable 1,4-beta-D-glucan cellobiohydrolase C OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=cbhC PE=3 SV=1
2.54e-111 44 396 96 454
Probable 1,4-beta-D-glucan cellobiohydrolase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=cbhC PE=3 SV=1
2.54e-111 44 396 96 454
Probable 1,4-beta-D-glucan cellobiohydrolase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=cbhC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000384 0.999606 CS pos: 17-18. Pr: 0.8726

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_08623-RA-p1.