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CAZyme Information: RL4_JR_07790-RA-p1

You are here: Home > Sequence: RL4_JR_07790-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_07790-RA-p1
CAZy Family GH72
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
393 45344.26 6.7766
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RL4_JR_07790-RA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT17 50 380 1.1e-72 0.9823943661971831

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
398414 Glyco_transf_17 8.69e-37 50 356 58 306
Glycosyltransferase family 17. This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumor progression.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.27e-121 51 393 60 368
2.56e-120 47 393 57 365
3.94e-120 48 391 47 354
1.88e-118 52 391 52 355
1.68e-116 49 393 71 378

PDB Hits      help

RL4_JR_07790-RA-p1 has no PDB hit.

Swiss-Prot Hits      help

RL4_JR_07790-RA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.480631 0.519364 CS pos: 22-23. Pr: 0.3672

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_07790-RA-p1.