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CAZyme Information: RL4_JR_07577-RA-p1

You are here: Home > Sequence: RL4_JR_07577-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_07577-RA-p1
CAZy Family GH64
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
328 JACBXF010000010|CGC1 33697.48 9.5880
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:30

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 80 262 1.3e-88 0.994475138121547

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 3.21e-64 80 266 1 190
Amb_all domain.
226384 PelB 1.33e-47 78 308 78 325
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 1.47e-39 90 262 29 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.13e-131 1 328 1 330
8.09e-129 1 328 1 331
5.36e-127 1 328 1 331
2.34e-125 1 326 1 327
2.61e-124 1 326 1 326

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.31e-32 96 323 80 321
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
7.25e-28 89 239 74 246
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]
1.47e-26 78 248 49 222
Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
2.93e-26 91 240 128 302
Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1.19e-25 91 323 123 394
Structural insights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.83e-120 31 328 37 331
Pectate lyase B OS=Colletotrichum gloeosporioides OX=474922 GN=PLB PE=3 SV=1
4.58e-101 1 328 1 321
Probable pectate lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyA PE=3 SV=1
4.58e-101 1 328 1 321
Probable pectate lyase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyA PE=3 SV=1
5.25e-100 42 328 38 321
Probable pectate lyase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyA PE=3 SV=1
7.31e-99 11 328 15 327
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000367 0.999590 CS pos: 32-33. Pr: 0.3931

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_07577-RA-p1.