logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RL4_JR_05028-RA-p1

You are here: Home > Sequence: RL4_JR_05028-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_05028-RA-p1
CAZy Family GH18
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
661 JACBXF010000067|CGC9 73484.11 7.2678
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RL4_JR_05028-RA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT90 354 642 4.3e-59 0.944

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214773 CAP10 8.88e-09 523 641 133 251
Putative lipopolysaccharide-modifying enzyme.
310354 Glyco_transf_90 4.80e-04 528 641 208 321
Glycosyl transferase family 90. This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.67e-233 89 659 57 606
3.14e-227 89 655 63 608
5.00e-226 106 656 11 542
3.73e-225 89 659 61 610
2.32e-224 106 656 11 542

PDB Hits      help

RL4_JR_05028-RA-p1 has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.56e-40 66 660 130 685
Beta-1,2-xylosyltransferase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CXT1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999991 0.000020

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_05028-RA-p1.