CAZyme Information: RL4_JR_03936-RA-p1

Basic Information

• Species: Raffaelea lauricola
• Lineage: Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
• CAZyme ID: RL4_JR_03936-RA-p1
• CAZy Family: GH139
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
468	JACBXF010000149|CGC10	47680.52	6.2913

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_RlauricolaRL4	10461	N/A	146	10315

• Gene Location: location=JACBXF010000149:3460661-3462173(-)

Full Sequence      

MKSLIVAGLAVAASASKCANVLAPSYNTPVVASGWTAQIVANGLTKPRSIQFDKAGGLLV
LESGKGLSRLVFKDNGNTCLEVTSKSLVVNDTTLNHGLALSSDQSVVLVSSAAAVHGYAY
DATAGTVSGSPRTLVDGMRNSDLTTRTLLVSQKQTSTLLVSRGSGEDYDVSAMNASTGLS
QIRAFDLGRFYGSSASASAAAYDFGTGGLRLGWGLRNSVGVAEHPGTGEIYAVDNGIDAA
VRDGVDIHQDNPGEELNALGPLSNLSTTSQGGNFGYPNCFAVWDTAIPDNTSLVVGQPVS
MILNSTYNDTTCAATTIAPRLTFPAHMAPLGLLFSADGATAYVTFHGSTGKTSRVGYHVA
SVAFNNSTGAPVAAATSTTALTDIITNPDLTKCPGSCFRPVGLAWDSAGRLFMSSDTTGE
IFVLQKAANAATAGTMVTSKSAAADRLSHGSAALGAGIAAAVMAVLAM

Enzyme Prediction     

No EC number prediction in RL4_JR_03936-RA-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA12	19	424	1.5e-154	0.9950124688279302

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225044	YliI	6.83e-17	7	348	24	341	Glucose/arabinose dehydrogenase, beta-propeller fold [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UQC81439.1|AA12	1.57e-140	1	460	33	490
VBB80430.1|AA12	5.56e-138	18	426	23	429
CDP28783.1|AA12	2.58e-131	18	426	23	431
QDS74351.1|AA12	7.50e-131	3	435	10	435
EAA30888.1|AA12	1.21e-130	2	426	8	448

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6I1Q_A	6.13e-125	20	426	2	402	Iodide structure of Trichoderma reesei Carbohydrate-Active Enzymes Family AA12 [Trichoderma reesei RUT C-30]
6H7T_A	6.33e-125	20	426	3	403	Native structure of Trichoderma reesei Carbohydrate-Active Enzymes Family AA12 [Trichoderma reesei RUT C-30]
6I1T_A	6.54e-125	20	426	4	404	Calcium structure of Trichoderma reesei Carbohydrate-Active Enzymes Family AA12 [Trichoderma reesei RUT C-30]
6JT5_A	3.42e-54	31	426	17	410	Chain A, Extracellular PQQ-dependent sugar dehydrogenase [Coprinopsis cinerea],6JWF_A Chain A, Extracellular PQQ-dependent sugar dehydrogenase [Coprinopsis cinerea],6JWF_B Chain B, Extracellular PQQ-dependent sugar dehydrogenase [Coprinopsis cinerea]

Swiss-Prot Hits     

RL4_JR_03936-RA-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000093	0.999915	CS pos: 17-18. Pr: 0.9642

TMHMM  Annotations     

There is no transmembrane helices in RL4_JR_03936-RA-p1.