CAZyme Information: RL4_JR_03913-RA-p1

Basic Information

• Species: Raffaelea lauricola
• Lineage: Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
• CAZyme ID: RL4_JR_03913-RA-p1
• CAZy Family: GH135
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
608		64857.77	6.2448

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_RlauricolaRL4	10461	N/A	146	10315

• Gene Location: location=JACBXF010000149:3409333-3411368(-)

Full Sequence      

MRAFPLLLHGGLALARRIPRHATVVDRDAVASAYDFVIAGGGIAGLTVADRLTEDPNVRV
LVLEAGPLDSSEDGVLVPGAYNPSAYLWPGLLTVPQTALNNQVYLGICGRVVGGGSTVNA
MIFTRGDQQDYADWSQLGNEGWSWSDLLPYFQKMQNWRPKATSPGSTRSTDTQVRSKSRI
PITSSPEVTGIWWTAALQSGLQPDEDPNDGTARGLFALPLAEDASSRTRSYARTNHYERV
RARSNYHLLPDTTVAKVLFDNQTASGVQYLPTAGGNTSTVAASREVLLAAGGLHTPQILQ
LSGVGPQALLASFGIDVVSDLPGVGQNFQDQPTIPMTYNFSQNVEPNWGSLLNNASYDAE
QRARYDRNKTGPYTLVRTVSTNFATLSLQDATDQFGAIAAAARARNATENLPAGTDPTVA
AGYHAQRTLLLQQLESAVGVGGLQWNTYATTTVFAFKPFSRGTVAVASTDPLAHPVVDFR
AATDPTDLDVYAALVRKSRAVMAAPAMAALGPVENAPFGADVQSDDALHAALRTALSPTN
GHECCTAAMLPRARGGVVDDQLRVYGVQRLRVIDISYFPLPVTGAPSATLYATGEKVADL
LKQQYGGR

Enzyme Prediction     

No EC number prediction in RL4_JR_03913-RA-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	33	603	3.4e-161	0.9947183098591549

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
235000	PRK02106	5.88e-82	34	600	6	530	choline dehydrogenase; Validated
225186	BetA	2.00e-81	28	602	2	534	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739	GMC_oxred_C	4.27e-30	458	596	1	142	GMC oxidoreductase. This domain found associated with pfam00732.
366272	GMC_oxred_N	1.82e-29	97	333	12	218	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
215420	PLN02785	1.10e-13	17	332	39	328	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AEO67797.1|AA3_2	2.18e-218	17	605	28	636
CDP29496.1|AA3_2	1.20e-205	5	606	17	642
VBB81292.1|AA3_2	1.20e-205	5	606	17	642
CAP65285.1|AA3_2	1.20e-205	5	606	17	642
BCS25132.1|AA3_2	2.42e-194	2	606	3	618

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6ZE2_A	2.96e-210	30	605	2	586	Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE2_B Chain B, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE3_A Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE4_A Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE4_B Chain B, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE5_A Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE5_B Chain B, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE6_A Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE6_B Chain B, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE7_A Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],6ZE7_B Chain B, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],7AA2_A Chain A, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495],7AA2_B Chain B, FAD-dependent oxidoreductase [Thermochaetoides thermophila DSM 1495]
6O9N_A	3.18e-96	3	605	5	642	Structural insights on a new fungal aryl-alcohol oxidase [Thermothelomyces thermophilus],6O9N_B Structural insights on a new fungal aryl-alcohol oxidase [Thermothelomyces thermophilus]
4YNT_A	7.09e-58	34	603	6	566	Crystal structure of Aspergillus flavus FAD glucose dehydrogenase [Aspergillus flavus NRRL3357],4YNU_A Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone [Aspergillus flavus NRRL3357]
6XUT_A	1.50e-51	34	602	17	588	Chain A, Oligosaccharide dehydrogenase [Trametes cinnabarina],6XUU_A Chain A, Oligosaccharide dehydrogenase [Trametes cinnabarina],6XUV_A Chain A, Oligosaccharide dehydrogenase [Trametes cinnabarina]
6ZH7_A	9.93e-49	30	601	4	560	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q5AUN2|XPTC_EMENI	1.39e-188	6	606	13	618	Dehydrogenase xptC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=xptC PE=3 SV=1
sp|A0A2H3D1U1|ARMD5_ARMGA	1.82e-73	21	603	27	631	Dehydrogenase ARMGADRAFT_1018426 OS=Armillaria gallica OX=47427 GN=ARMGADRAFT_1018426 PE=1 SV=1
sp|Q5B8A1|PKFF_EMENI	6.12e-62	34	603	41	609	Dehydrogenase pkfF OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pkfF PE=2 SV=1
sp|M5EAX2|GMCH_MALS4	1.86e-61	28	601	41	615	GMC oxidoreductase family protein Mala s 12 OS=Malassezia sympodialis (strain ATCC 42132) OX=1230383 GN=MSY001_2108 PE=1 SV=1
sp|Q5GMY3|GMCH_MALSM	1.86e-61	28	601	41	615	GMC oxidoreductase family protein Mala s 12.0101 OS=Malassezia sympodialis OX=76777 PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
0.999469	0.000582

TMHMM  Annotations     

There is no transmembrane helices in RL4_JR_03913-RA-p1.