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CAZyme Information: RL4_JR_03617-RA-p1

You are here: Home > Sequence: RL4_JR_03617-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_03617-RA-p1
CAZy Family GH128
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
497 JACBXF010000149|CGC5 53391.67 4.7071
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RL4_JR_03617-RA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 74 405 1.4e-49 0.9107692307692308

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.25e-19 159 412 56 317
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 2.17e-16 24 374 36 375
Probable polygalacturonase
177865 PLN02218 1.78e-15 43 373 69 388
polygalacturonase ADPG
215540 PLN03010 1.72e-14 193 420 167 396
polygalacturonase
227721 Pgu1 5.92e-13 32 326 73 392
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.42e-276 13 497 8 489
4.95e-264 20 497 14 488
4.70e-262 20 497 14 488
4.70e-262 20 497 14 488
4.70e-262 20 497 14 488

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.88e-90 24 475 1 404
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
2.82e-08 163 406 90 326
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.82e-08 163 406 90 326
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
1.26e-07 223 381 173 328
Endo-Polygalacturonase Ii From Aspergillus Niger [Aspergillus niger],1CZF_B Endo-Polygalacturonase Ii From Aspergillus Niger [Aspergillus niger]
2.01e-07 163 381 82 302
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.06e-90 24 478 22 430
Probable rhamnogalacturonase E OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rhgE PE=3 SV=2
7.66e-90 8 475 3 422
Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
1.83e-89 24 478 18 423
Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2
1.42e-88 24 478 19 424
Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgA PE=3 SV=1
1.42e-88 24 478 19 424
Rhamnogalacturonase A OS=Aspergillus niger OX=5061 GN=rhgA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000206 0.999754 CS pos: 23-24. Pr: 0.9627

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_03617-RA-p1.