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CAZyme Information: RL4_JR_02347-RA-p1

You are here: Home > Sequence: RL4_JR_02347-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_02347-RA-p1
CAZy Family CBM67|GH78
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
567 JACBXF010000032|CGC2 61313.81 4.9634
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:13

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 25 561 7.5e-138 0.9726277372262774

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 1.77e-22 44 562 23 536
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739 GMC_oxred_C 5.72e-15 418 555 3 143
GMC oxidoreductase. This domain found associated with pfam00732.
366272 GMC_oxred_N 2.32e-08 117 324 27 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
235000 PRK02106 2.73e-05 226 293 206 278
choline dehydrogenase; Validated
274143 pyranose_ox 1.04e-04 495 564 483 547
pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.22e-235 24 563 32 565
1.80e-222 1 563 1 561
3.85e-76 22 560 244 784
6.07e-70 26 561 246 784
5.97e-69 26 560 246 783

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.06e-65 28 560 7 543
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
2.19e-64 9 560 207 764
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]
1.53e-63 28 560 229 765
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
5.08e-62 25 560 4 540
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.23e-61 29 560 3 535
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.14e-59 25 560 231 767
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
1.27e-11 25 559 10 526
Choline oxidase OS=Arthrobacter globiformis OX=1665 GN=codA PE=1 SV=1
6.97e-10 28 560 46 616
GMC oxidoreductase family protein Mala s 12 OS=Malassezia sympodialis (strain ATCC 42132) OX=1230383 GN=MSY001_2108 PE=1 SV=1
6.97e-10 28 560 46 616
GMC oxidoreductase family protein Mala s 12.0101 OS=Malassezia sympodialis OX=76777 PE=1 SV=2
8.96e-10 9 562 26 596
Cyclase atC OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=atC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000888 0.999070 CS pos: 23-24. Pr: 0.9736

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_02347-RA-p1.