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CAZyme Information: RL4_JR_02170-RA-p1

You are here: Home > Sequence: RL4_JR_02170-RA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raffaelea lauricola
Lineage Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
CAZyme ID RL4_JR_02170-RA-p1
CAZy Family CBM21
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
302 33188.31 6.4339
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_RlauricolaRL4 10461 N/A 146 10315
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 2.3.1.122:4 3.1.1.-:4 2.3.1.20:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 23 297 4e-53 0.9823788546255506

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
178061 PLN02442 9.94e-118 12 300 14 281
S-formylglutathione hydrolase
131868 fghA_ester_D 6.43e-113 10 300 7 275
S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification]
223700 FrmB 1.38e-80 11 300 15 312
S-formylglutathione hydrolase FrmB [Defense mechanisms].
395613 Esterase 6.01e-49 23 295 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
225375 YbbA 3.49e-07 13 289 8 252
Predicted hydrolase of the alpha/beta superfamily [General function prediction only].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.06e-12 74 272 68 276
1.33e-10 19 245 25 233
1.39e-10 74 224 43 208
1.64e-10 74 244 68 251
1.66e-10 74 224 69 234

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.10e-89 12 300 12 280
Chain A, S-formylglutathione hydrolase [Homo sapiens],3FCX_B Chain B, S-formylglutathione hydrolase [Homo sapiens]
6.12e-75 1 300 2 278
Bromide soaked structure of an esterase from the oil-degrading bacterium Oleispira antarctica [Oleispira antarctica]
6.74e-74 1 300 1 277
S-formylglutathione hydrolase homolog from a psychrophilic bacterium of Shewanella frigidimarina [Shewanella frigidimarina],6JZL_B S-formylglutathione hydrolase homolog from a psychrophilic bacterium of Shewanella frigidimarina [Shewanella frigidimarina]
5.01e-73 13 300 11 296
Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST [Saccharomyces cerevisiae],1PV1_B Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST [Saccharomyces cerevisiae],1PV1_C Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST [Saccharomyces cerevisiae],1PV1_D Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST [Saccharomyces cerevisiae]
8.97e-72 11 300 12 278
Structure of an esterase from the oil-degrading bacterium Oleispira antarctica [Oleispira antarctica],3I6Y_B Structure of an esterase from the oil-degrading bacterium Oleispira antarctica [Oleispira antarctica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.24e-89 12 300 12 280
S-formylglutathione hydrolase OS=Mus musculus OX=10090 GN=Esd PE=1 SV=1
7.42e-89 12 300 12 280
S-formylglutathione hydrolase OS=Rattus norvegicus OX=10116 GN=Esd PE=2 SV=1
2.99e-88 12 300 12 280
S-formylglutathione hydrolase OS=Sus scrofa OX=9823 GN=ESD PE=2 SV=1
2.42e-87 12 300 12 280
S-formylglutathione hydrolase OS=Homo sapiens OX=9606 GN=ESD PE=1 SV=2
2.24e-85 12 300 12 280
S-formylglutathione hydrolase OS=Bos taurus OX=9913 GN=ESD PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000077 0.000004

TMHMM  Annotations      help

There is no transmembrane helices in RL4_JR_02170-RA-p1.