CAZyme Information: RL4_JR_00020-RA-p1

Basic Information

• Species: Raffaelea lauricola
• Lineage: Ascomycota; Sordariomycetes; ; Ophiostomataceae; Raffaelea; Raffaelea lauricola
• CAZyme ID: RL4_JR_00020-RA-p1
• CAZy Family: AA1
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
774		83652.37	4.5530

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_RlauricolaRL4	10461	N/A	146	10315

• Gene Location: location=JACBXF010000169:119791-122168(+)

Full Sequence      

MKGTFCMLFLYDFVGLAAAEAKYTSLYKNPNASVEDRVADLIKRMTIEDKAAQLIQGDIS
NWINTTDGTFNATGLQWSMQHRAGQFYVGYPTNWSIINNGVKTAQDYLTYNTTLGIPAFV
QSEGIHGFLIPNATIFNSPIAHACSFNPPLVEKMAKAIAQEALALGVNQLFAPLGDLARE
LRYGRVEETFGEDSFLTGELAYAYVKGLQSGKVAATVKHFAAYATPEQGLNTGPVHGGER
ELLATYLPSYKRAIIDGNAYSVMSAYHCYDGVPAVADYHMLTEILRESWGFKYLVMSDAG
GTDRLCSAFGLCEENPIDSEAVTSLALPAGNDVEMGGGSYNFQKIPEMVKAGNLNEKFVD
LAVSRVLRAKFELGLFETPYLGVTDSEAPNYINTPETIQLARQLDAESIVLLENHEDILP
LNNTANIAVIGPMAHGFMNYGDYVPYKSQYQGVTPLDGIRAASRGTVTYAQGCERWSNDE
SGFPEAIATAEAADVAVVIVGTWSRDQKELWAGMNATTGEHIDVSSLNLVGAMSRLVSAI
INTGKPTIVVFSSGKPITEPWISQSASALVQQFYPSEQGGNALADVLFGDINPSGKLPIS
FPHDVGTTPAYYDFLNSGRASVSSGTIYTNGTLDFGSSYVFQSPLPLYEFGYGKSYSTFD
YSGLVLSTINASVADTVVVSVAVKNNSTRDGTEVVQLYVKDMISSVVVPNKQLKGFAKVH
INAGETETVAIDLKVADLGLWDIKLNYVVELGNFTVYVGSSSVDLRANATLTVV

Enzyme Prediction     

EC	3.2.1.120:1	3.2.1.21:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	111	335	4.4e-61	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
185053	PRK15098	1.96e-157	5	766	4	758	beta-glucosidase BglX.
178629	PLN03080	2.75e-77	114	731	79	740	Probable beta-xylosidase; Provisional
224389	BglX	8.46e-73	45	462	1	386	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
395747	Glyco_hydro_3	6.17e-56	46	369	1	316	Glycosyl hydrolase family 3 N terminal domain.
396478	Glyco_hydro_3_C	5.14e-55	409	656	1	216	Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QSZ32114.1|GH3	0.0	16	773	15	776
APA15785.1|GH3	0.0	19	774	16	777
CCD56845.1|GH3	0.0	19	774	16	777
ATZ51038.1|GH3	0.0	19	774	16	777
UQC73622.1|GH3	0.0	26	774	29	775

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5YOT_A	0.0	27	770	7	753	Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40],5YOT_B Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40],5YQS_A Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40],5YQS_B Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40]
7EAP_A	0.0	27	770	7	753	Chain A, Fn3_like domain-containing protein [Aspergillus oryzae RIB40]
5Z87_A	2.52e-118	27	766	36	778	Chain A, EmGH1 [Aurantiacibacter marinus],5Z87_B Chain B, EmGH1 [Aurantiacibacter marinus]
6R5I_A	2.40e-108	101	769	58	729	Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5I_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5N_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5N_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
6R5P_A	1.03e-107	29	769	29	761	Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5P_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|T2KMH0|PLH24_FORAG	8.09e-111	111	762	60	710	Beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22130 PE=1 SV=1
sp|P33363|BGLX_ECOLI	6.70e-109	14	766	11	758	Periplasmic beta-glucosidase OS=Escherichia coli (strain K12) OX=83333 GN=bglX PE=3 SV=2
sp|Q56078|BGLX_SALTY	6.70e-109	14	766	11	758	Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=bglX PE=3 SV=2
sp|T2KMH9|PLH34_FORAG	7.92e-108	27	766	29	748	Putative beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22230 PE=2 SV=1
sp|P14002|BGLB_ACET2	1.97e-80	114	771	35	672	Thermostable beta-glucosidase B OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=bglB PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.066516	0.933464	CS pos: 19-20. Pr: 0.8915

TMHMM  Annotations     

There is no transmembrane helices in RL4_JR_00020-RA-p1.