logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RAK78022.1

You are here: Home > Sequence: RAK78022.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus fijiensis
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus fijiensis
CAZyme ID RAK78022.1
CAZy Family GH3
CAZyme Description endo-rhamnogalacturonase F
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
487 KZ824639|CGC1 52140.41 4.4391
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AfijiensisCBS313.89 12336 1448319 318 12018
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in RAK78022.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 147 401 4.9e-49 0.7630769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 4.03e-22 157 403 61 315
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 2.99e-17 35 360 69 383
polygalacturonase ADPG
215540 PLN03010 5.01e-16 35 410 48 396
polygalacturonase
227721 Pgu1 3.83e-15 35 318 84 392
Polygalacturonase [Carbohydrate transport and metabolism].
215426 PLN02793 4.71e-15 155 360 149 369
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.83e-303 7 487 7 487
9.83e-303 7 487 7 487
1.06e-302 7 487 9 489
2.59e-282 2 487 4 488
2.59e-282 2 487 4 488

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.00e-95 16 480 1 418
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
3.58e-10 174 361 99 295
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
1.16e-09 140 396 70 326
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.16e-09 140 396 70 326
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
6.27e-09 140 365 62 298
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.11e-98 12 475 15 432
Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgA PE=3 SV=1
1.16e-97 12 475 15 432
Rhamnogalacturonase A OS=Aspergillus niger OX=5061 GN=rhgA PE=1 SV=1
1.73e-97 12 480 14 436
Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2
2.39e-95 12 480 15 436
Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
2.14e-94 13 480 19 441
Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000248 0.999735 CS pos: 15-16. Pr: 0.9700

TMHMM  Annotations      help

There is no transmembrane helices in RAK78022.1.