logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: RAK74880.1

You are here: Home > Sequence: RAK74880.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus fijiensis
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus fijiensis
CAZyme ID RAK74880.1
CAZy Family CE4
CAZyme Description glycogen debranching enzyme
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1540 173069.44 6.2551
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AfijiensisCBS313.89 12336 1448319 318 12018
Gene Location Start: 217033; End:221780  Strand: +

Full Sequence      Download help

MSSPRQVYLL  PLKDDGSPDV  PGGYIYLPAP  SDPSYLLRFV  IEGTSSICRE  GQLWVNIPED60
GHPFDRSAFR  SFRLSPDFNK  NIQIDVPITS  PGSFAFYVTF  SPLPEFSVSQ  TATPEPTRTP120
TYYIDVSPKL  TLRGRDLPLN  ALSIYSVISK  FLGKYPTDWD  KHLNGISQRN  YNMIHFTPLM180
KRGDSNSPYS  IFDQLQFDDT  VFPNGEADVA  NLVTKMEEKH  GLLSLTDVVW  NHTANNSKWL240
EEHPEAGYSV  QTAPWLESAL  ELDNALLKFG  GNLASLGLPT  DFKSVDDLVA  VMNAVREHVI300
HKLKLWEFYV  VNVAADTQKV  IQQWQTSKSI  DITSDEWSHH  KLKDFGSWTL  EEQAIFVREK360
AIPKSKQLLG  RYSRAIEPKF  GAAILTALLG  PSDAATSDTT  AAEKAISKLL  DEVNLPFYKE420
YDADIAEIMN  QLFNRIKYLR  IDSHGPKLGP  VTERSPLIET  YFTRLPSNDT  TKKHDSRALA480
LVNNGWIWNA  DALRDNAGPF  SKSYLRREVI  VWGDCVKLRY  GSSPEDNPFL  WEFMTKYTRL540
MAKYFSGFRI  DNCHSTPLVV  AEYLLDEARK  VRPNLTVFAE  LFTGSEEADY  IFVKRLGINA600
LIREAMQAWS  TGELSRLVHR  HGGRPIGSFG  VDVPASGSSH  AIASSGIDSG  KEKVSHIRPN660
PVQALFMDCT  HDNEMPAQKR  TAIDTLPNAA  LVAMCASAIG  SVIGYDEIYP  KLVDLVHETR720
LYSSKFSESS  KVDLNSLEGG  IGGIKKLLNE  LHTVMGSEGY  DETHIHHDGE  YITVHRVHPK780
TRKGVFLIAH  TAFPGQDSKA  ILAPTRLVGT  RAKHIGTWRL  EVDSSESTRK  EVSEDKSYLR840
GLPSQVHAIE  GTKAEQDGND  TVISVLESLV  AGSISLYETS  IPSAEHASGL  DVHITEGVDD900
AFGKLSLVDL  NFVLYRCEAE  ERNSSNGQDG  VYSIPNYGSL  VYAGLQGWWS  VLENVIKYNE960
LGHPLCDHLR  NGQWALDYIV  GRLEKVAKTE  GYSALHKPAA  WLREKFEAVR  SLPSFLLPRY1020
FAIIVQTAYN  AAWKRGIQLL  GGNIQKGQEF  IHQLGMVSVQ  MTGYVNSASL  WPTKRVPSLA1080
AGLPHFAVDW  ARCWGRDVFI  SLRGLLLCTS  RFEDAREHIF  AFASVLKHGM  IPNLLSSGRL1140
PRYNSRDSVW  FFLQSIQDYT  MMAPDGIKLL  DEKVPRRFLP  YDDTWFPFDD  PRAYSKHSTI1200
SEVIQEVFQR  HAQGLSFREY  NAGPDLDIQM  KPEGFDINVQ  VDWETGLIFG  GSQFNCGTWQ1260
DKMGESEKAK  NKGVPGTPRD  GAAIEITGLV  YSALKWVAEL  HERGLYQHSG  VDLEEGKSVT1320
FKSWAAKIKE  NFERCYYVPP  NPDEDANYVV  DRNVVNRRGI  YKDLYKSGKP  YEDYQLRSNF1380
PIAMTVAPDL  FTPSKALSAL  ALADEVLVGP  VGMATLDPSD  LNYRPYYNNS  EDSEDFATSK1440
GRNYHQGPEW  VWQRGFFLRA  FLHFDLARRT  TREERTEAYQ  QVTRRLEGCK  KALRESPWRG1500
LTELSNKDGA  HCADSSPTQA  WSAGCLLDLY  YDASQYTQDE  1540

Enzyme Prediction      help

EC 2.4.1.25:2 3.2.1.33:2 2.4.1.25:22 3.2.1.33:21

CAZyme Signature Domains help

Created with Snap7715423130838546253961669377084792410011078115512321309138614632434GH13
Family Start End Evalue family coverage
GH13 1076 1527 3.2e-202 0.9953917050691244

CDD Domains      download full data without filtering help

Created with Snap771542313083854625396166937708479241001107811551232130913861463121608AmyAc_Glg_debranch_2201532glyc_debranch135576hDGE_amylase10561528GDE_C740983hGDE_central
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
200466 AmyAc_Glg_debranch_2 0.0 121 608 1 478
Alpha amylase catalytic domain found in glycogen debranching enzymes. Debranching enzymes facilitate the breakdown of glycogen through glucosyltransferase and glucosidase activity. These activities are performed by a single enzyme in mammals, yeast, and some bacteria, but by two distinct enzymes in Escherichia coli and other bacteria. Debranching enzymes perform two activities, 4-alpha-D-glucanotransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). 4-alpha-D-glucanotransferase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The catalytic triad (DED), which is highly conserved in other debranching enzymes, is not present in this group. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.
273673 glyc_debranch 0.0 20 1532 4 1463
glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4-->1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. [Energy metabolism, Biosynthesis and degradation of polysaccharides]
405401 hDGE_amylase 0.0 135 576 1 439
Glycogen debranching enzyme, glucanotransferase domain. This is a glucanotransferase catalytic domain of the eukaryotic variant of the glycogen debranching enzyme (GDE). The eukaryotic GDEs performs two functions: 4-alpha-D-glucanotransferase, EC:2.4.1.25, and Amylo-alpha-1,6-glucosidase, EC:3.2.1.33, performed by the, respectively N- and C- terminal halves of eukaryotic GDE enzymes. The domain is a catalytic domain responsible for the glucanotransferase function. It belongs to the alpha-amylase clan and is predicted to have a structure of a 8-stranded alpha/beta barrel (TIM barrel) where strands are interrupted by long loops and additional mini-domains. In most other amylases, the catalytic domain is followed by a beta- barrel substrate binding domain, but presence of such a domain cannot be verified in the human (and other eukaryotic) GDE enzymes.
283786 GDE_C 6.50e-135 1056 1528 1 374
Amylo-alpha-1,6-glucosidase. This family includes human glycogen branching enzyme AGL. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homolog GDB1 that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).
405402 hGDE_central 7.52e-127 740 983 1 242
Central domain of human glycogen debranching enzyme. This is a central domain of the eukaryotic variant of the glycogen debranching enzyme (GDE). The eukaryotic GDE performs two functions: 4-alpha-D-glucanotransferase, EC:2.4.1.25, and Amylo-alpha-1,6-glucosidase, EC:3.2.1.33, performed by the, respectively N- and C- terminal halves of eukaryotic GDE enzyme This central domain follows the glucanotransferase domain and precedes the glucosidase (GDE_N) domain. It is very likely that the current definition contains two or more domains, by analogy with baterial GDEs, this domain should be involved in substrate- binding either for the N-terminal glucanotransferase and/or the the C-terminal glucosidase (or both).

CAZyme Hits      help

Created with Snap77154231308385462539616693770847924100110781155123213091386146311539BCS08305.1|GH13_25|GH13311539BCR95772.1|GH13_25|GH13311538CAK37087.1|GH13_25|GH13311515GAA83544.1|GH13_25|GH13311536BAE55891.1|GH13_25|GH133
Hit ID E-Value Query Start Query End Hit Start Hit End
BCS08305.1|GH13_25|GH133 0.0 1 1539 1 1539
BCR95772.1|GH13_25|GH133 0.0 1 1539 1 1539
CAK37087.1|GH13_25|GH133 0.0 1 1538 1 1538
GAA83544.1|GH13_25|GH133 0.0 1 1515 1 1515
BAE55891.1|GH13_25|GH133 0.0 1 1536 1 1532

PDB Hits      download full data without filtering help

Created with Snap771542313083854625396166937708479241001107811551232130913861463315325D06_A315325D0F_A315327EIM_A315327EKU_A315327EKW_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5D06_A 0.0 3 1532 2 1521
Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme [[Candida] glabrata CBS 138],5D06_B Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme [[Candida] glabrata CBS 138]
5D0F_A 0.0 3 1532 2 1521
Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (E564Q) in complex with maltopentaose [[Candida] glabrata CBS 138],5D0F_B Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (E564Q) in complex with maltopentaose [[Candida] glabrata CBS 138]
7EIM_A 0.0 3 1532 2 1521
Chain A, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EIM_B Chain B, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EJP_A Chain A, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EJP_B Chain B, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EJT_A Chain A, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EJT_B Chain B, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138]
7EKU_A 0.0 3 1532 2 1521
Chain A, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EKU_B Chain B, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138]
7EKW_A 0.0 3 1532 2 1521
Chain A, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138],7EKW_B Chain B, 4-alpha-glucanotransferase [[Candida] glabrata CBS 138]

Swiss-Prot Hits      download full data without filtering help

Created with Snap77154231308385462539616693770847924100110781155123213091386146391540sp|Q06625|GDE_YEAST531532sp|A8BQB4|GDE_HORSE531532sp|Q2PQH8|GDE_CANLF531532sp|P35574|GDE_RABIT531532sp|P35573|GDE_HUMAN
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|Q06625|GDE_YEAST 0.0 9 1540 6 1535
Glycogen debranching enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GDB1 PE=1 SV=1
sp|A8BQB4|GDE_HORSE 4.64e-318 53 1532 46 1532
Glycogen debranching enzyme OS=Equus caballus OX=9796 GN=AGL PE=2 SV=1
sp|Q2PQH8|GDE_CANLF 2.58e-317 53 1532 46 1532
Glycogen debranching enzyme OS=Canis lupus familiaris OX=9615 GN=AGL PE=2 SV=1
sp|P35574|GDE_RABIT 3.05e-315 53 1532 69 1554
Glycogen debranching enzyme OS=Oryctolagus cuniculus OX=9986 GN=AGL PE=1 SV=1
sp|P35573|GDE_HUMAN 3.08e-315 53 1532 46 1531
Glycogen debranching enzyme OS=Homo sapiens OX=9606 GN=AGL PE=1 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000067 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in RAK74880.1.