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CAZyme Information: QRD81220.1

You are here: Home > Sequence: QRD81220.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus flavus
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus flavus
CAZyme ID QRD81220.1
CAZy Family AA1
CAZyme Description galacturan 1,4-alpha-galacturonidase C
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
447 48522.09 6.1151
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AflavusNRRL3357_2020 13958 N/A 249 13709
Gene Location Start: 172790; End:174581  Strand: -

Full Sequence      Download help

MIFSDWVMQL  SAAALFLALP  KSVASTSDLS  VPPWAGSPVA  PKNTGKTCTV  IPVGDKQDDV60
PQILAAFKEC  NHGGRIVFPE  GHTYWIAQKL  NPVVTDVTVD  WKGRWLFSDD  IGKWRNNTYW120
IEFQNHWTAF  ALSGQRIHIN  GHGTGGIDGS  GNSWYNVEKT  FTQPGRPMAF  TPWNVTDLHV180
EHFSIIDSPL  WALFIINGTN  SKFDDIVVNS  TAVNAPWGTN  WVQNTDGFDT  MDSRNISLTN240
FIYQGGDDAI  AIKPRSYGIY  MQNVTIHGGN  GPAIGSLGQY  LEDSSVKDII  MRDVHILSYN300
EDMKNAAYVK  TWVGELVPQD  PSKNGWYESG  GKPRGGGCGN  VTNIRFENFH  VEGSSAGASI360
NQNSGDNGSY  AGTSKMLVSD  VTFVNFTGYI  SNSKSGSVSC  SKRYPCYNIA  FEDFSLAHGS420
NGTATNATGS  CSYIKPGGVI  GLNGCGN447

Enzyme Prediction      help

No EC number prediction in QRD81220.1.

CAZyme Signature Domains help

Created with Snap224467891111341561782012232452682903123353573794024249320GH28
Family Start End Evalue family coverage
GH28 69 434 3.8e-60 0.9569230769230769

CDD Domains      download full data without filtering help

Created with Snap22446789111134156178201223245268290312335357379402424133432Glyco_hydro_2833416PLN0279346427PLN0221853444PLN0300354424PLN03010
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.20e-24 133 432 49 320
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 1.18e-22 33 416 38 394
Probable polygalacturonase
177865 PLN02218 1.00e-20 46 427 63 418
polygalacturonase ADPG
178580 PLN03003 1.10e-19 53 444 32 385
Probable polygalacturonase At3g15720
215540 PLN03010 9.37e-17 54 424 56 382
polygalacturonase

CAZyme Hits      help

Created with Snap224467891111341561782012232452682903123353573794024241447QRD81220.1|GH281447UDD54702.1|GH281445QMW38981.1|GH281445QMW26901.1|GH2838446ATZ55904.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
QRD81220.1|GH28 0.0 1 447 1 447
UDD54702.1|GH28 0.0 1 447 1 447
QMW38981.1|GH28 2.62e-276 1 445 1 383
QMW26901.1|GH28 2.62e-276 1 445 1 383
ATZ55904.1|GH28 1.55e-192 38 446 30 436

PDB Hits      download full data without filtering help

Created with Snap22446789111134156178201223245268290312335357379402424483924C2L_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4C2L_A 7.35e-24 48 392 19 334
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2244678911113415617820122324526829031233535737940242442445sp|A2RAY7|RGXC_ASPNC48445sp|A1D415|RGXC_NEOFI42423sp|Q2EQQ2|RGXA_ASPNG42423sp|A2QBB4|RGXA_ASPNC45416sp|B8NJB0|RGXA_ASPFN
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|A2RAY7|RGXC_ASPNC 2.57e-178 42 445 24 423
Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxC PE=2 SV=1
sp|A1D415|RGXC_NEOFI 5.09e-156 48 445 32 423
Putative galacturan 1,4-alpha-galacturonidase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rgxC PE=3 SV=1
sp|Q2EQQ2|RGXA_ASPNG 4.82e-67 42 423 26 420
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
sp|A2QBB4|RGXA_ASPNC 9.50e-67 42 423 26 420
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
sp|B8NJB0|RGXA_ASPFN 4.75e-62 45 416 28 412
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000296 0.999674 CS pos: 25-26. Pr: 0.8927

TMHMM  Annotations      help

There is no transmembrane helices in QRD81220.1.