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CAZyme Information: QRD06666.1

You are here: Home > Sequence: QRD06666.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Parastagonospora nodorum
Lineage Ascomycota; Dothideomycetes; ; Phaeosphaeriaceae; Parastagonospora; Parastagonospora nodorum
CAZyme ID QRD06666.1
CAZy Family GT31
CAZyme Description Glycoside hydrolase family 28 protein [Source:UniProtKB/TrEMBL;Acc:A0A7U2IBC3]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
403 CP069043|CGC5 44275.87 7.7159
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PnodorumSN15 17580 321614 132 17448
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in QRD06666.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 48 381 6.7e-68 0.96

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
215120 PLN02188 5.37e-36 33 378 48 389
polygalacturonase/glycoside hydrolase family protein
177865 PLN02218 3.42e-34 33 380 79 419
polygalacturonase ADPG
395231 Glyco_hydro_28 6.77e-34 93 387 22 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 2.94e-29 111 376 141 406
Probable polygalacturonase
178580 PLN03003 1.18e-26 113 389 113 385
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.76e-312 1 403 1 403
5.06e-177 18 402 19 425
1.35e-131 7 313 10 331
6.24e-116 11 402 10 438
1.61e-113 36 402 42 438

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.93e-39 25 388 17 383
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
1.16e-18 110 370 66 335
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
1.10e-12 201 376 177 350
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
1.76e-12 110 387 69 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.56e-67 13 387 18 436
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
2.10e-66 12 387 17 436
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
9.36e-64 24 387 28 435
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
9.36e-64 24 387 28 435
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
1.76e-61 5 389 9 417
Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.119737 0.880232 CS pos: 18-19. Pr: 0.7801

TMHMM  Annotations      help

There is no transmembrane helices in QRD06666.1.