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CAZyme Information: QRD01027.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Parastagonospora nodorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Dothideomycetes; ; Phaeosphaeriaceae; Parastagonospora; Parastagonospora nodorum | |||||||||||
| CAZyme ID | QRD01027.1 | |||||||||||
| CAZy Family | GH2 | |||||||||||
| CAZyme Description | GMC_OxRdtase_N domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A7U2I5W5] | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 25 | 615 | 4.2e-72 | 0.5080906148867314 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 225186 | BetA | 8.13e-58 | 44 | 615 | 23 | 536 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| 235000 | PRK02106 | 2.88e-50 | 50 | 613 | 28 | 532 | choline dehydrogenase; Validated |
| 398739 | GMC_oxred_C | 3.12e-28 | 459 | 608 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
| 215420 | PLN02785 | 1.69e-19 | 282 | 604 | 235 | 568 | Protein HOTHEAD |
| 366272 | GMC_oxred_N | 1.41e-17 | 129 | 386 | 19 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 617 | 1 | 617 | |
| 8.90e-214 | 29 | 615 | 85 | 661 | |
| 5.03e-189 | 27 | 615 | 26 | 613 | |
| 5.03e-189 | 27 | 615 | 26 | 613 | |
| 5.03e-189 | 27 | 615 | 26 | 613 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.56e-38 | 23 | 610 | 8 | 524 | Chain A, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
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| 2.88e-38 | 23 | 610 | 8 | 524 | Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
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| 2.88e-38 | 23 | 610 | 8 | 524 | Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
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| 3.22e-32 | 29 | 608 | 8 | 556 | Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
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| 3.94e-32 | 29 | 608 | 84 | 632 | Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.27e-43 | 29 | 612 | 5 | 533 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1 |
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| 4.61e-43 | 20 | 610 | 34 | 571 | Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1 |
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| 8.10e-43 | 29 | 612 | 7 | 535 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1 |
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| 8.10e-43 | 29 | 612 | 7 | 535 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1 |
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| 5.21e-42 | 29 | 612 | 5 | 533 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000409 | 0.999569 | CS pos: 22-23. Pr: 0.9148 |