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CAZyme Information: QRD00187.1

You are here: Home > Sequence: QRD00187.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Parastagonospora nodorum
Lineage Ascomycota; Dothideomycetes; ; Phaeosphaeriaceae; Parastagonospora; Parastagonospora nodorum
CAZyme ID QRD00187.1
CAZy Family GH17
CAZyme Description Glyco_hydro_30C domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A7U2I543]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
471 50980.96 6.0531
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PnodorumSN15 17580 321614 132 17448
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8:3 3.2.1.-:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH30 25 466 1.6e-190 0.9954853273137697

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
227807 XynC 5.78e-22 1 466 1 427
O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis].
396577 Glyco_hydro_59 5.21e-11 59 336 21 251
Glycosyl hydrolase family 59.
307945 Glyco_hydro_30 1.03e-08 137 344 95 313
Glycosyl hydrolase family 30 TIM-barrel domain.
405300 Glyco_hydr_30_2 2.27e-07 25 339 1 356
O-Glycosyl hydrolase family 30.
407314 Glyco_hydro_30C 6.02e-07 377 465 1 63
Glycosyl hydrolase family 30 beta sandwich domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 471 1 471
3.73e-231 23 469 49 495
6.34e-217 23 469 49 495
3.86e-182 16 470 17 480
4.54e-169 16 470 17 462

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.19e-158 26 470 3 450
Chain A, GH30 family xylanase [Thermothelomyces thermophilus ATCC 42464],7O0E_G Chain G, GH30 family xylanase [Thermothelomyces thermophilus ATCC 42464]
9.33e-158 18 470 1 457
Chain AAA, GH30 family xylanase [Thermothelomyces thermophilus ATCC 42464]
1.02e-128 28 468 24 472
Chain A, GH30 Xylanase B [Talaromyces cellulolyticus CF-2612],6IUJ_B Chain B, GH30 Xylanase B [Talaromyces cellulolyticus CF-2612]
9.34e-128 28 468 95 543
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris [Saccharomyces uvarum],6KRN_A Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris in complex with aldotriuronic acid [Saccharomyces uvarum]
1.98e-115 27 467 24 453
Chain A, GH30 Xylanase C [Talaromyces cellulolyticus CF-2612],6M5Z_B Chain B, GH30 Xylanase C [Talaromyces cellulolyticus CF-2612]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.09e-159 14 470 15 474
GH30 family xylanase OS=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) OX=573729 GN=Xyn30A PE=1 SV=1
4.65e-12 138 467 111 420
Glucuronoxylanase XynC OS=Bacillus subtilis (strain 168) OX=224308 GN=xynC PE=1 SV=1
5.56e-10 29 404 88 475
Putative glucosylceramidase 2 OS=Caenorhabditis elegans OX=6239 GN=gba-2 PE=3 SV=2
5.63e-10 28 420 87 494
Putative glucosylceramidase 1 OS=Caenorhabditis elegans OX=6239 GN=gba-1 PE=1 SV=2
7.06e-09 27 471 92 522
Putative glucosylceramidase 3 OS=Caenorhabditis elegans OX=6239 GN=gba-3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001131 0.998826 CS pos: 23-24. Pr: 0.3916

TMHMM  Annotations      help

There is no transmembrane helices in QRD00187.1.