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CAZyme Information: PYU1_T006416-p1

You are here: Home > Sequence: PYU1_T006416-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium ultimum
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium ultimum
CAZyme ID PYU1_T006416-p1
CAZy Family GH5
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
272 28354.60 4.5819
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GultimumDAOMBR144 15430 431595 140 15290
Gene Location Start: 550568; End:551386  Strand: -

Full Sequence      Download help

MNVFATTGAL  LLAATPAVLA  HGNIVDPPAV  WQAGYPQNGF  ISEVSSTLWG  DMDGATYGYG60
PEGAVKYFTK  NFPAGSTLKD  LILKNQKMYD  ASTDPQCGLT  IKDEAKRATM  PSEVKFSGFS120
HPGPCELWCD  NNKLAFANDC  AATYPTGVVP  VDASKCAGAD  RFRIFWIGVH  SAPWQVYTDC180
VYLKGGKSGA  TTPATTPKAA  GSTPTVTSAA  PVANDADDET  DAPAATPAPA  ADDDEYATPA240
PAADDDEYAT  DAPAASTPSP  TKKKCTGKVR  RA272

Enzyme Prediction      help

No EC number prediction in PYU1_T006416-p1.

CAZyme Signature Domains help

Created with Snap132740546881951081221361491631761902042172312442584232AA17
Family Start End Evalue family coverage
AA17 10 244 8.8e-56 0.9306122448979591

CDD Domains      download full data without filtering help

Created with Snap13274054688195108122136149163176190204217231244258182264Med3
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
402954 Med3 0.009 182 264 124 200
Mediator complex subunit 3 fungal. Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator subunit Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor.

CAZyme Hits      help

Created with Snap132740546881951081221361491631761902042172312442587186EGZ10739.1|AA177186ETI31514.1|AA177186ETK71917.1|AA177195ETI31524.1|AA177186ETP29504.1|AA17
Hit ID E-Value Query Start Query End Hit Start Hit End
EGZ10739.1|AA17 1.82e-64 7 186 9 193
ETI31514.1|AA17 2.22e-63 7 186 9 193
ETK71917.1|AA17 2.22e-63 7 186 9 193
ETI31524.1|AA17 4.48e-63 7 195 9 202
ETP29504.1|AA17 8.63e-63 7 186 9 193

PDB Hits      help

PYU1_T006416-p1 has no PDB hit.

Swiss-Prot Hits      help

PYU1_T006416-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000221 0.999740 CS pos: 20-21. Pr: 0.9786

TMHMM  Annotations      help

There is no transmembrane helices in PYU1_T006416-p1.